Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0837 ATGGGTCGTGGCAAGTTAAAAATGGAGTTGATCGCTAATGAGAAACTTCGATGCAGAACTTTCCGAAATAGGCAAAAGGGCTTGAAGAAAAAGCTCCAGGAGTTGTCAACTCTATGTGATGTTGAAGCGTGTATGATCATGCATTGTGATCAGAATGGCAATGGCACCTATTCTTCTCAGCCTGATGTTTGGCCTGAAAATCACTATGAAGTTCAACGTATAGTGAACAAGTACATGAAAGAAGACCATGGAAAGAGGACGATGGATTTATCTGACATTCTTGAAAGCAGAAAGAGGAAGGCCGAACTTGAGCTGCAAAAGCTGCGGGAAAAAAATGGCGAAACCAAAGGGCAGACTTCTGAGACTGGATTGGAACTGGATGGGCTTTCCTATGAAAATCTGATGGAAATAAATGATCAATTGGACAGGAAACTTGAACATGTGATGAGTCTGATTGATTTGAAGAAGGGAGAAGCGGGCTTGATGAGTAAGACTCCTGTGAACTCCTCTCATATCCCGGGTTTGCCTATAGCTGAGCAAGCCTTTCAAGGCATTGAAATGTTCTTATATGATTTGGATTTTCCCGATACAAGTAGTGGAGTGGTTGAATCTGATTTGAACCCGATGATGATGATGAATATGGAGAATAGCGGATATCCAGAATTTGGAAGTGGAAAGGCATCCAGCAGTGAGCTCCTGCACCACAATACTCAATTTCAGGACCCAATTCATTGTGATCCAGCTCATGGGATGTTCAAGAATAACACTGATCCTTCAACTTCATATCAGAAGATGGGGACTGTTCCTACCATGCAAGACATGTCGGTATCCAAGAATACGATGATGTTTAACACCCATCCCACAAATTCCATGCCGCAGATGGGGTTGTCTGAGAATATGATGTTCGACATGGATCATAGCATCTACTCTATGCAGCAAATATCGGCATATAGGCAGTACCTCTTGGACGGTTATTTGTTCTTTCATTCTTGA 993 0.424 MGRGKLKMELIANEKLRCRTFRNRQKGLKKKLQELSTLCDVEACMIMHCDQNGNGTYSSQPDVWPENHYEVQRIVNKYMKEDHGKRTMDLSDILESRKRKAELELQKLREKNGETKGQTSETGLELDGLSYENLMEINDQLDRKLEHVMSLIDLKKGEAGLMSKTPVNSSHIPGLPIAEQAFQGIEMFLYDLDFPDTSSGVVESDLNPMMMMNMENSGYPEFGSGKASSSELLHHNTQFQDPIHCDPAHGMFKNNTDPSTSYQKMGTVPTMQDMSVSKNTMMFNTHPTNSMPQMGLSENMMFDMDHSIYSMQQISAYRQYLLDGYLFFHS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0837 330 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Vvi17g0837 330 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0837 330 CDD MADS_SRF_like 2 92 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi17g0837 330 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0837 330 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vvi17g0837 330 SUPERFAMILY SRF-like 1 89 IPR036879 GO:0003677|GO:0046983
Vvi17g0837 330 Coils Coil 91 118 - -
Vvi17g0837 330 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0837 330 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0837 330 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0837 330 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0837 Vvi-Chr17 9620370 9621362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0837 3 190 Type I MADS-box Gene Family AT1G65300 32.857 6.88e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi17g0837 SRF-TF 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0837 - - vvi:104882390 676.781