Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0831 ATGCCTTCTGTGAAAAGTAAGGAGAATTTGCAATGTTCAGTGTGTTTGGATGATTTTGAGATTAGCGCTGAGGCAGGGGAGATGCCATGTAAGCATAAATTCCACAGTGGGTGTATTCTGCCATGGCTGGAGCTTCATAGCTCTTGTCCAGTCCGCATGTTTCAGATAGCAGCTGATGAATCCAAGCTTGATTCAGATGCTTCTCAGAATGTTAGCAGTAACAATGGCCATGGTAGCAGTGAAGGTGGAGTGAGGTTTTTTTGTAGTGCTAGTAGCCTAGTACTTAGGCTTTTCAATGGTTCTGATCAAGCATGGAAAAGCGTCACAAATCTGCCATGGAAGCTGACCAGACAAAGCTTGTTTTTGGAGTGCTTTTCTCTCTTGTTGTTGTGGTTTTTACTGCAACGGACCCAAATGACCTTGCAATTCTGA 432 0.4375 MPSVKSKENLQCSVCLDDFEISAEAGEMPCKHKFHSGCILPWLELHSSCPVRMFQIAADESKLDSDASQNVSSNNGHGSSEGGVRFFCSASSLVLRLFNGSDQAWKSVTNLPWKLTRQSLFLECFSLLLLWFLLQRTQMTLQF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0831 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
Vvi17g0831 143 ProSiteProfiles Zinc finger RING-type profile. 12 51 IPR001841 -
Vvi17g0831 143 SMART ring_2 12 52 IPR001841 -
Vvi17g0831 143 Pfam Ring finger domain 11 51 IPR001841 -
Vvi17g0831 143 SUPERFAMILY RING/U-box 5 51 - -
Vvi17g0831 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0831 Vvi-Chr17 9600692 9601123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0831 12 74 C3H Transcription Factor Family AT1G68180 35.385 1.31e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0831 K11982 - vvi:100250148 142.51