Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0817 ATGAAGAATTTCCAGTGGTTTAAAAAAATTTCCAATAATGGGATTATTGGAAAATCCGAGGGAAGGCTTTCCCTGGGTGAATATAGGCGAGCAGTTTCATGGTCCAAGTATTTGGTGTCATCTGGTGCTGAGATAAAAGAAGAGGGGGAGGGAGATTGGAGCGCGGATATGTCTCAGCTGTTCATAGGGTGTAAATTCGCTTCAGGCCGGCACAGTAGGATTTATAGAGGGATATACAAGCAGAGGGATGTGGCGATTAAGCTCATAAGCCAGCCCGAGGAAGACGAGAGCCTGGCTAATTTGCTTGAGAAGCAGTTTACTTCGGAGGTTGCTTTGCTGTTTCGCCTGCGGCATCCTAATATCATCACTTTTGTTGCAGCATGTAAGAAACCTCCTGTGTTCTGTATAATCACCGAGTACTTGGCTGGGGGCTCCCTGAGAAAATTCCTCCATCAGCAGGAGCCATATTCAGTTCCATACGACCTGGTACTGAAATTTTCCCTAGACATTGCATGTGGGATGCAGTATCTTCATTCTCAGGGGATACTCCATAGGGATCTCAAATCAGAAAATCTACTACTTGGGGAAGATATGTGTGTGAAGGTGGCAGATTTTGGTATCTCATGCTTGGAGACTCAATGTGGCAGTGCAAAGGGATTTACAGGAACTTACCGTTGGATGGCTCCGGAAATGATCAAAGAAAAACACCATACAAAGAAAGTTGATGTTTACAGTTTTGGCATAGTCCTATGGGAGCTTTTAACTGCATTGATACCATTTGACAATATGACTCCAGAACAGGCTGCTTTTGCAGTCTCCCAAAAGAATGCAAGGCCACCATTAGACCCTGCATGCCCTATGGCATTTCGTCACCTCATCAGCAGATGCTGGTCAAGCAGCGCAGACAAGCGTCCCCATTTTGATGAGATTGTTTCGATTCTTGAAAGTTATTCAGAGTCTTTTAAGCAAGATCCGGATTTTTTCTCATCCTACAAACCATCCGATGATCATGCTTTTTTGAGATGCTTACCAAAGTGTATTGCTGCCCGAAGATCTTCTGCTTCTTTGGAAGCCTAA 1077 0.4438 MKNFQWFKKISNNGIIGKSEGRLSLGEYRRAVSWSKYLVSSGAEIKEEGEGDWSADMSQLFIGCKFASGRHSRIYRGIYKQRDVAIKLISQPEEDESLANLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKFLHQQEPYSVPYDLVLKFSLDIACGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLETQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDNMTPEQAAFAVSQKNARPPLDPACPMAFRHLISRCWSSSADKRPHFDEIVSILESYSESFKQDPDFFSSYKPSDDHAFLRCLPKCIAARRSSASLEA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0817 358 Gene3D Phosphorylase Kinase; domain 1 50 141 - -
Vvi17g0817 358 ProSiteProfiles Protein kinase domain profile. 60 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0817 358 SUPERFAMILY Protein kinase-like (PK-like) 50 314 IPR011009 -
Vvi17g0817 358 FunFam Serine/threonine-protein kinase isoform 1 50 142 - -
Vvi17g0817 358 Gene3D Transferase(Phosphotransferase) domain 1 143 336 - -
Vvi17g0817 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Vvi17g0817 358 CDD STKc_MAP3K-like 67 314 - -
Vvi17g0817 358 PRINTS Tyrosine kinase catalytic domain signature 222 232 IPR001245 GO:0004672|GO:0006468
Vvi17g0817 358 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Vvi17g0817 358 PRINTS Tyrosine kinase catalytic domain signature 138 151 IPR001245 GO:0004672|GO:0006468
Vvi17g0817 358 PRINTS Tyrosine kinase catalytic domain signature 241 263 IPR001245 GO:0004672|GO:0006468
Vvi17g0817 358 PRINTS Tyrosine kinase catalytic domain signature 176 194 IPR001245 GO:0004672|GO:0006468
Vvi17g0817 358 SMART serkin_6 60 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0817 358 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 57 316 - -
Vvi17g0817 358 Pfam Protein tyrosine and serine/threonine kinase 64 314 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0817 Vvi-Chr17 9309638 9313761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0817 33 323 MAP Kinase Kinase Kinase AT1G62400 63.946 5.75e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi17g0817 PK_Tyr_Ser-Thr 1.7e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0817 - - vvi:100244957 732.25