Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0814 ATGGCTATCCGAGGAGTAGATTTCAAGTGGTATGATGGGTTTTTCTTGTCGATGCTCGCTACTAGTGTAATAATTGTAGCAATCAATTGGAAGCGATACGATCTATGTACATATCCGTTGCATATATGGATCATGGTTGACTATACCACTGTGTTTGTTTTTCGGCTCTTGATGTTTGTAGATAATGGGCTTGCTGCTGGAATGGGTTTGGATTTTGGGTGGCAGCAGAGATATGCTCGCTTTTGTGGAAGAATAGTGGTTCTTTCCATTCTTTCTTTGCTACTTTATCCCTTTCTTTGGGCTTGGACTGTAATTGGTACTCTGTGGTTCACTAGGGCAAGAGACTGTTTACCTGAAGAAGGTCAGAAATGGGGTTTCCTTATTTGGTTGCTTTTCAGCTATTGTGGACTCCTTTGCATTGCTTGCATGTCCATGGGGAAGTGGTTTTCACGAAGACAAGCACACTTACTACGTGCTCAACAAGGGATTCCTGTTTCAGAATATGGGGTTTTGGTGGACATGATCAGGGTACCAGATTGGGCTTTTGAAGCTGCAGGCCAGGAGATGAGAGGCATGGGTCAAGATGCTGCTGCATACCATCCTGGCCTTTACTTGACTCCAACTCAGAGGGAAGCAGTGGAGGCTCTTATTCAAGAACTTCCAAAGTTCAGGCTGAAGGCAGTTCCAACTGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCCATGTGGGAAATGAGGTTCGTGGCCTTCCCTGTGCTCACAATTTCCATGTGGAATGCATTGATGAGTGGCTCCGGTTGAATGTGAAATGTCCTCGTTGCCGCTGCTCAGTCTTCCCAAACCTTGACCTTAGCGCGCTGACCCATTTTCGGGCCGATTCAGAAAGATCATCTGCTAGTGTGGTGACAGCCACTCGTTATGTGAGAGTCCAACCTCCCAGCCAGGGCTATATGTTGAGATTGCAGGGCTTTCTCCGGCCAGTCCGGACGGAAAATGCAGGGGCAGGCAACGATGCAGATAATGCTTTGGAAAATGCTGAGAATGGTGGTCTGCCAGTTGTAACGGATGATCTCACAAACACAGAACCAGCACCTTTTGATAATGGAGTGCTGGTTCATCACTCCACCCCACCTCAAAGTTAA 1146 0.4677 MAIRGVDFKWYDGFFLSMLATSVIIVAINWKRYDLCTYPLHIWIMVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILSLLLYPFLWAWTVIGTLWFTRARDCLPEEGQKWGFLIWLLFSYCGLLCIACMSMGKWFSRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQEMRGMGQDAAAYHPGLYLTPTQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALTHFRADSERSSASVVTATRYVRVQPPSQGYMLRLQGFLRPVRTENAGAGNDADNALENAENGGLPVVTDDLTNTEPAPFDNGVLVHHSTPPQS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0814 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Vvi17g0814 381 SUPERFAMILY RING/U-box 217 284 - -
Vvi17g0814 381 Pfam Ring finger domain 234 276 IPR001841 -
Vvi17g0814 381 SMART ring_2 235 275 IPR001841 -
Vvi17g0814 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Vvi17g0814 381 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Vvi17g0814 381 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0814 Vvi-Chr17 9273047 9280318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0814 58 360 C3H Transcription Factor Family AT3G47990 73.529 1.63e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0814 K16284 - vvi:100260484 780.015