Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0808 ATGACCAAGATGAACGGGCCTCCGCTGAAACCAGATCGAAAGACTACAGAGAGGAACAGAAGAATTCACATGAAGAGCCTTTGCTTTAAGCTTTCTTCTCTCATCCCTCCCAATCAATTCAAAACCTCTAAGGACATGTTATCACAGCAAGACCAGCTGGAGCAGGCAGCAAACTACATAAAGCAACTGAAGGAAAGAATAGAGGAATTAAAGGGGAGGAAGGAGCTGGCAACGAGGGTTGCAGGAACAAACAATAATCTCATCGACGCGGTGATGATTGGCTTGAGATTGCCGGTGATCGATTTGAGGGACTTGGGTTCTAGTCTAGAAGTGATGCTGATTAGTGGGTTGAACAAGAACTTCATGTTATACGAGGTCATTAGTGTTCTTGAGGAAGAAGGAGCTGAAGTTGTGAGTGCTAGCGTTTCAACTGTGGGCGATAAGGTTTTCCACTCACTCCATGCCCAGGTCAAAATCTCTAGGGTTGGTGTAGAGACTTCAAGGGTCTGGCAGAGATTGCAGGAGTTAATCTACTGA 537 0.4562 MTKMNGPPLKPDRKTTERNRRIHMKSLCFKLSSLIPPNQFKTSKDMLSQQDQLEQAANYIKQLKERIEELKGRKELATRVAGTNNNLIDAVMIGLRLPVIDLRDLGSSLEVMLISGLNKNFMLYEVISVLEEEGAEVVSASVSTVGDKVFHSLHAQVKISRVGVETSRVWQRLQELIY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0808 178 Coils Coil 46 80 - -
Vvi17g0808 178 FunFam Transcription factor bHLH162 1 91 - -
Vvi17g0808 178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 78 IPR036638 GO:0046983
Vvi17g0808 178 SMART finulus 14 69 IPR011598 GO:0046983
Vvi17g0808 178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 63 IPR011598 GO:0046983
Vvi17g0808 178 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 177 - -
Vvi17g0808 178 Pfam Helix-loop-helix DNA-binding domain 15 64 IPR011598 GO:0046983
Vvi17g0808 178 Gene3D - 9 90 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0808 Vvi-Chr17 9199636 9201391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0808 12 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.500 1.66e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0808 HLH 9.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0808 - - vvi:100253569 338.576