Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0807 ATGAAGGAGAGCAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTCAAGAGCTTGGATGAGCAACTGGAGAAGCATCTTAACAGAGTATGGACCATGGACAAGAACAAGAAGAAAGAGGATGACTCCTCCTCCGCCGCCGCCGCCATCCCCACCCTCGCCCCCTCCACCACCGCCTCCACCACCGCCCCCACCACCGCCCGACAAGACTGGGAGATCGACCCCTCTAAGCTCATCATCAAGACCGTCATTGCTCGTGGCACTTTCGGCACTGTCCACCGTGGCGTTTACGACGGCCAAGATGTTGCCGTTAAACTGCTTGATTGGGGGGAAGAGGGTCACAGGACAGAAGCTGAAATTGCTTCACTGAGGGCGGCTTTTACGCAAGAGGTAGCCGTGTGGCATAAGCTTGACCATCCTAATGTAACAAAGTTTATAGGGGCGACGATGGGCTCAGCGGAGCTAAACATACAAACGGAGAATGGTCATATAGGCATGCCAAGTAATATTTGTTGTGTTGTTGTGGAGTATCTTCCAGGGGGTGCCCTGAAATCTTATCTCATAAAGAACCGAAGAAGAAAGTTGGCTTTCAAAGTTGTCATTCAGCTGGCACTTGATCTTGCAAGAGGGTTGAGTTACCTTCACTCTCAGAAGATTGTTCACAGAGATGTAAAGACAGAGAACATGCTATTGGACAAGACTCGAACTGTAAAGATAGCTGATTTTGGAGTTGCTCGGGTTGAGGCTTCAAATCCTAATGACATGACTGGGGAGACTGGGACCCTTGGTTACATGGCTCCAGAGGTATTGTCCTTTTGCAGAAATGGGGGTGTCAAAGTAGTGGCCATAACATTTATGATCAAATTGTTCAACTACTAA 879 0.4903 MKESSDGFVRADQIDLKSLDEQLEKHLNRVWTMDKNKKKEDDSSSAAAAIPTLAPSTTASTTAPTTARQDWEIDPSKLIIKTVIARGTFGTVHRGVYDGQDVAVKLLDWGEEGHRTEAEIASLRAAFTQEVAVWHKLDHPNVTKFIGATMGSAELNIQTENGHIGMPSNICCVVVEYLPGGALKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLSFCRNGGVKVVAITFMIKLFNY* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0807 292 MobiDBLite consensus disorder prediction 49 68 - -
Vvi17g0807 292 Gene3D Phosphorylase Kinase; domain 1 66 161 - -
Vvi17g0807 292 SMART serkin_6 78 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0807 292 Pfam Protein kinase domain 82 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0807 292 MobiDBLite consensus disorder prediction 32 68 - -
Vvi17g0807 292 Gene3D Transferase(Phosphotransferase) domain 1 162 280 - -
Vvi17g0807 292 SUPERFAMILY Protein kinase-like (PK-like) 57 274 IPR011009 -
Vvi17g0807 292 FunFam Kinase suppressor of Ras 1 67 162 - -
Vvi17g0807 292 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 270 - -
Vvi17g0807 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vvi17g0807 292 ProSiteProfiles Protein kinase domain profile. 78 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0807 Vvi-Chr17 9168079 9172240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0807 1 271 MAP Kinase Kinase Kinase AT5G50000 79.348 4.71e-161 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi17g0807 Pkinase 2.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0807 - - vvi:100250035 497.664