Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0803 ATGTCCCAAGATGAACTGAAGAAGCTTCCTTGCTTTGAATACAAGGCGGTAGCACTAGAGAAAGCGAGTAACAGCCCAGTGGATTGTGCCGTTTGCTTAGAGAATTTCAGGAAGGGGGATAAGTGCAGGTTATTACCAAACTGTTTACTGCATCTGCATTTGGTTGGTGGGATAAAAGTTATAGGATTGAGATCTGATCCAAGGAAATACTATTCCCTGGAAAAGTATGGTTGGCAATTTGAATTTCAGCAGTTGGGCAATAGTCCTGGAATGGAGTTCTCTGCTGACTGA 291 0.4296 MSQDELKKLPCFEYKAVALEKASNSPVDCAVCLENFRKGDKCRLLPNCLLHLHLVGGIKVIGLRSDPRKYYSLEKYGWQFEFQQLGNSPGMEFSAD* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0803 96 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 56 IPR013083 -
Vvi17g0803 96 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0803 Vvi-Chr17 9112816 9113626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0803 1 54 C3H Transcription Factor Family AT2G18650 42.593 1.37e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0803 - - vvi:100852675 102.064