Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0799 ATGTTTCAAAGTTTTAACCGGTCCGACCGCCGTATTCTCAGTTTTCCGGCGGTTCACCCCTGCGAAAGCATTTCTCCAGTGACCCTTTTAGGCTCTCTCATCGCTCTCTCCACCAGCATACTGAATTACCAATCAAAATCCTTCCCAACCCAGAAGCGAAATGCGCGGGAAACACTTCGCCAAATCGGAATTCTGTTAATCTTTTTCGAAGAAATCCAGGACCGCCGGTCGGTTCTGCCGGACTCCGTTGTCCTCTGCTTTTCCGAGCTCCATCTCGCTTTCCAGAAAATCCAGTTCCTGTTAGAAGACTGTAGTCGAGAGGGAGCTCGGCTTTGGATTCTGATGAAGTCTCAATTCGTTGCGACTCAGTTCCGGGTCTTGATTCGGGCGTTTGCGACGGCTCTTGAGGTTTTGCCATTGAATTGCATTGATTTGACGAGTGAAGTGAAGGAGTTGGTTGAACTGGTGGCCAAGCAAGCCAGGAAGGCGAGATTTGACCTCGACGCTAACGACGAATGCGCTGCCAAGGATGTTATATGGATTTTGAATCAATTCGAGAAGAGAATTGAGCCGGATATGAGTGTTGTGAAGAGGGTTCTTGATCACCTTGAGATTCGAAGCTGGAGTGAATGTAACAAGGAGATAAGATTCATGGAGGAACTGAGCTTGGAATGTGATGAAAGAGAGGTTACATTATTGAAAAGTTTAATGGGGTTGATGAGCTACTGCAGAGGAGTGATGTTCGAAGAAATAGAGTCTAGCGGCACTGATCAAACGGAGGGGAGGTGCAGCGTGGAGATGCTTAGTTGCTTGAATCCTGAAGATTTTCGATGCCCCATTTCTCTCGAGCTAATGACTGATCCAGTGACGGTATCTACGGGCCAGACTTATGATCGGTCCTCAATTCAGAAATGGCTCAGAGCTGGGAACATCATCTGTCCCAAAACAGGTGAGAAGCTGATCAACAAAGAATTGGTGCCTAATTCTGCTCTCCGAAAGCTTATCCAACAATTCTGTGAAGATCATGGCGTTTCACTAGCAAAAACAGAAACCCAGAATAGTAACGCAGCAAGGACCATTGCCGTAAACAGTCCAGCAGCCGCAGAAGCTACAAGATTTCTTTCAAAATTTCTTGCCAGAAGACTAGTATCTGGAACAGGCGAACAGAAAAACAAGGCTGCTTACGAGATTCGTTTGCTTGCAAAATCAAGTGTCTTCAATAGGTGTTGCTTGATCGAGGCCGGCACTGTCCCACCTCTCTTGAATCTCCTCTCTTCCACAGACGCACCCACGCAAGAGAACGCCATTGCAGCTTTACTGAAGCTCTCTAAGCATTCCAAAGGCAAGAAAGTGATCATGGACAGTGGAGGGCTGAAGTTGATACTTAAAGTTCTCAAGGTGGGACCCAGGTTAGAGTCCCGGCAGATAGCAGCTGCGACTCTGTTTTATCTAGCTTCAGTGGACAAGTACCGATCATTGATCGGAGAAACACCGGAGGCAATCCCATCTCTAGTTGAACTGATAAAAACTGGAACAACTATTGGGAAAATGCATGCAGTTGTCGCAATATTTGGACTGCTCCTATGCCGGGAGAATTGCCCCAGAGTGCTCGCAGCTGGAACCGTTCCATTGCTGGTTCATCTTTTAGCTTCTTCAGTGAAGGAAGATCTGGCAACAGAGTCATTAGCAGCTCTGGCAAAACTTTCAGAGCATATAGACGGATCACTGGCGATCCTAAGGGCCTCGGGCTTACCTCTAATTACAAAAATTCTGCAATCTTCTCCATCCCGAACAGGAAAAGAGTACTGTGTCTCAATTTTGCTGTCTCTTTGCATCAATGGCAGCATAGAAGTGACAGTTGATTTAGCAAAAGACCCAACACTAATGACTTCCCTATACTCCCTTGTGACTGAAGGCACCTCACATGGCAGCAAGAAGGCCTGCTCGCTCCTCAAAATCATACATAAATTTCTGGAAACAGACTCTTCTGGTCTGAGGAGTTCACAAGTTCCACAGGAAAGGTTCCTTCGCGTCCGGTAG 2040 0.4686 MFQSFNRSDRRILSFPAVHPCESISPVTLLGSLIALSTSILNYQSKSFPTQKRNARETLRQIGILLIFFEEIQDRRSVLPDSVVLCFSELHLAFQKIQFLLEDCSREGARLWILMKSQFVATQFRVLIRAFATALEVLPLNCIDLTSEVKELVELVAKQARKARFDLDANDECAAKDVIWILNQFEKRIEPDMSVVKRVLDHLEIRSWSECNKEIRFMEELSLECDEREVTLLKSLMGLMSYCRGVMFEEIESSGTDQTEGRCSVEMLSCLNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLRAGNIICPKTGEKLINKELVPNSALRKLIQQFCEDHGVSLAKTETQNSNAARTIAVNSPAAAEATRFLSKFLARRLVSGTGEQKNKAAYEIRLLAKSSVFNRCCLIEAGTVPPLLNLLSSTDAPTQENAIAALLKLSKHSKGKKVIMDSGGLKLILKVLKVGPRLESRQIAAATLFYLASVDKYRSLIGETPEAIPSLVELIKTGTTIGKMHAVVAIFGLLLCRENCPRVLAAGTVPLLVHLLASSVKEDLATESLAALAKLSEHIDGSLAILRASGLPLITKILQSSPSRTGKEYCVSILLSLCINGSIEVTVDLAKDPTLMTSLYSLVTEGTSHGSKKACSLLKIIHKFLETDSSGLRSSQVPQERFLRVR* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0799 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Vvi17g0799 679 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
Vvi17g0799 679 Pfam Armadillo/beta-catenin-like repeat 411 443 IPR000225 GO:0005515
Vvi17g0799 679 SMART arm_5 404 444 IPR000225 GO:0005515
Vvi17g0799 679 SMART arm_5 529 570 IPR000225 GO:0005515
Vvi17g0799 679 SMART arm_5 445 486 IPR000225 GO:0005515
Vvi17g0799 679 FunFam RING-type E3 ubiquitin transferase 352 665 - -
Vvi17g0799 679 ProSitePatterns ATP synthase alpha and beta subunits signature. 16 25 IPR020003 GO:0005524
Vvi17g0799 679 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Vvi17g0799 679 FunFam RING-type E3 ubiquitin transferase 271 346 - -
Vvi17g0799 679 Gene3D - 346 668 IPR011989 -
Vvi17g0799 679 PANTHER U BOX DOMAIN-CONTAINING 57 653 - -
Vvi17g0799 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 415 457 IPR000225 GO:0005515
Vvi17g0799 679 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 540 583 IPR000225 GO:0005515
Vvi17g0799 679 SUPERFAMILY ARM repeat 377 654 IPR016024 -
Vvi17g0799 679 CDD RING-Ubox_PUB 273 325 IPR045210 -
Vvi17g0799 679 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Vvi17g0799 679 SUPERFAMILY RING/U-box 272 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0799 Vvi-Chr17 9075838 9077877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0799 1 677 U-box Gene Family AT1G60190 44.284 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0799 - - vvi:100241707 1295.03