Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0797 ATGAATAATAACATCCGCCCCTTCTCCTTTCGCCAGAAGTCCTGGTGGACCCAAATCCTCGACCCCGGTGGCCGTCTTGTCACTCAATGGAACCACATTTTCCTCATCTCCTGTTTGCTAGCTCTCTTTTTGGATCCTCTCTATTTCTATCTTCCGGTGATCGACGGCCCGGCCTGTTTTCGGATCGACCTGGGTTTGGGGATTGTCGTCACGTTTTTTCGGACGGTGGCTGATATGTTCTACCTGACCCATATGATCATGAAGTTTCGGATGGCTTTTGTGGCTCCCAGCTCTCGGGTTTTTGGGAGGGGAGAGCTTGTGATGGATCCGCAGCAGATTGCGCTGCGGTACTTGAAGTCTGACTTTATAATTGATTTCGCTGCAACACTGCCTCTCCCCCAGACGGTCATCTGGTACATAATTCCAGCAGTGAAAGACCCTATAACTGATCATGCTAATCATATTCTTTCATTGATTGTTCTCATTCAATATATTCCTCGATTGTTTCTCATTTTTCCTCTGTACCGGCGGATTGTTAAAATTACTGGGGTTGTGGCAAGAACTGCTTGGCTAGGGGCAGCATACAATCTTCTTCTCTATATGTTAGCAAGTCATGTTTTAGGAGCTTCATGGTATTTGTTATCCATTGAGCGGCAGCACTCATGCTGGAGCAAAGAATGTCAGAAGGAGGCAAATTCCATGCATTTCCCAACTTGTCATTCTTCATTTCTTGATTGTAGCACTTTGGAGCAGCCTGACCGCCGAGTTTGGCTGAACTTCAGTCATGTGCTCACCAATTGTCGTCCTGAAAATAGTATTGGGTTTGAGTATGGCATGTATTCTGATGCTTTTATTAATGAAGTTGCTTCCTCAACTTTCCTTGAGAAATACTTTTACTGCTTTTGGTGGGGTTTGAAGGGTCTAAGCTCGTATGGACAGAGTGTGGTGACAAGTACTTTCACTAGTGAAACATTATTTTGCATTGTTATTTGCATTGGGGGTCTAGTTCTATTCTCACATCTCATAGGCAACATGCAGACCTATCTACAAAACATGGGAATTAGACTTGAAGAATGGAGAATAAGAAGAAGAGATACAGAGGAGTGGATGAGGCATCGTCAACTGCCTCTAGATTTGCAAGAGCGTGTTCGCCGTTTTGTTCAATATAAATGGATTGCCACAAGAGGAGTAGATGAAGAAGCCATTTTGCGTGCCTTACCTTTGGACATCCGTCGTGAAATTCAAAGGCATCTTTGTTTGGCCCTTGTCCGCCGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTCTTAGATGCCATATGTGAACGTCTTGTGTCATCCTTAAGCACTCAAGATGCATATATTGTTCGGGAAGGTGATCCAGTGAATGAGATGTTTTTCATCATTAGGGGCCAACTAGAGAGCTCAACGACTAATGGGGGTCGGTCAGGTTTCTTCAACTCCATCACTCTCAGGCCTGGTGACTTCTGTGGGGAAGAGTTGTTGACTTGGGCCTTAATGCCCACTTCAAGCCTAAACCTACCATCCTCAACTCGAACCGTCAGGTCCACTACCAAAGTCGAAGCATTTGCACTTCGAGCTGAAGACCTCAAGTTTGTGGCAAACCAGTTTAAACGCCTCCACAGCAAGAAACTTCAGCATGCTTTCAGGTACTATTCCCATCAGTGGAGGACCTGGGGAGCTTGCTTTATACAAGTTGCATGGAGAAGGCTTAAAAGGAGAAAGCTGGCAAAGGAGTTGGCCAGACAAGAGAGCCTGTACTACATGCAAATTTCAGACCAAGAAGGTTACTTGAGTGAAATGACAGATGCAGATTACCAAACTAGCAGTGCTGAGATCTCATCAATGGAAAATTCACATGGGGGCCAGCAAATTGGAGCCACAGTTTTAGCTTCAAGCTTGAAGATGCCCAAACTGTTTAAGCCGGAGGAGCCTGATTTCTCCTCAGACCATGAAAATAGTTGA 1986 0.4507 MNNNIRPFSFRQKSWWTQILDPGGRLVTQWNHIFLISCLLALFLDPLYFYLPVIDGPACFRIDLGLGIVVTFFRTVADMFYLTHMIMKFRMAFVAPSSRVFGRGELVMDPQQIALRYLKSDFIIDFAATLPLPQTVIWYIIPAVKDPITDHANHILSLIVLIQYIPRLFLIFPLYRRIVKITGVVARTAWLGAAYNLLLYMLASHVLGASWYLLSIERQHSCWSKECQKEANSMHFPTCHSSFLDCSTLEQPDRRVWLNFSHVLTNCRPENSIGFEYGMYSDAFINEVASSTFLEKYFYCFWWGLKGLSSYGQSVVTSTFTSETLFCIVICIGGLVLFSHLIGNMQTYLQNMGIRLEEWRIRRRDTEEWMRHRQLPLDLQERVRRFVQYKWIATRGVDEEAILRALPLDIRREIQRHLCLALVRRVPFFSQMDDQLLDAICERLVSSLSTQDAYIVREGDPVNEMFFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPTSSLNLPSSTRTVRSTTKVEAFALRAEDLKFVANQFKRLHSKKLQHAFRYYSHQWRTWGACFIQVAWRRLKRRKLAKELARQESLYYMQISDQEGYLSEMTDADYQTSSAEISSMENSHGGQQIGATVLASSLKMPKLFKPEEPDFSSDHENS* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0797 661 FunFam Cyclic nucleotide-gated ion channel 1 426 544 - -
Vvi17g0797 661 Gene3D - 57 353 - -
Vvi17g0797 661 SUPERFAMILY Voltage-gated potassium channels 22 351 - -
Vvi17g0797 661 CDD CAP_ED 428 559 IPR000595 -
Vvi17g0797 661 SMART cnmp_10 428 559 IPR000595 -
Vvi17g0797 661 Pfam Ion transport protein 30 352 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi17g0797 661 Gene3D Jelly Rolls 426 546 IPR014710 -
Vvi17g0797 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 11 654 - -
Vvi17g0797 661 Pfam Cyclic nucleotide-binding domain 452 539 IPR000595 -
Vvi17g0797 661 SUPERFAMILY cAMP-binding domain-like 358 553 IPR018490 -
Vvi17g0797 661 Gene3D Helix hairpin bin 356 419 - -
Vvi17g0797 661 ProSiteProfiles cAMP/cGMP binding motif profile. 428 558 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0797 Vvi-Chr17 9032365 9039270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0797 15 660 Ion Channels AT5G14870 65.385 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0797 K05391 - vvi:100253469 1327