Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0796 ATGGGAATTAGACTTGAAGAATGGAGAGTAAGAAGAGATATAGAGGAGCATCTTTGTCTGGCCCTTGTCCATTGTGTTCCTTTCTTCTCACAAATGGATGATCAGCTCTTAGATGCCATATGCGAACGTCTCGTGTCATCCTTAAGCACTCAAGATGCATATATTGTTCGGGAGGGTGATCCAGTGAATGAGATGCTTTTCATCATTAGAGGCCAACGAGAGAGCTCAACGGCCAATGGGGGTCAATCAAGTTTCTTCAACTCCATCACTCTCAGGCCTGGTGACTTCTGTGGGAAGGAGTTGTTGACTTGGGCCTTAATGCCCACTTCAAGCCTGAATCTACCATCCTCAACTCGAACCATGAAGATGATTACCAAAGTCGAAGCATTTGCACTTCGAGCTGAAGACCTCAAGTTCGTGGGGAATCAGTTTAAACGCTTCCATAGCAAGAAACTTCAGCATGCTTTCAGGTACTATTCCCACCAGTCGAGGACATGGGGAGCTTGCTTTATACAAGTTGCATGGAGAAGGCTTAAAAGGTGA 543 0.4549 MGIRLEEWRVRRDIEEHLCLALVHCVPFFSQMDDQLLDAICERLVSSLSTQDAYIVREGDPVNEMLFIIRGQRESSTANGGQSSFFNSITLRPGDFCGKELLTWALMPTSSLNLPSSTRTMKMITKVEAFALRAEDLKFVGNQFKRFHSKKLQHAFRYYSHQSRTWGACFIQVAWRRLKR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0796 180 SMART cnmp_10 28 159 IPR000595 -
Vvi17g0796 180 SUPERFAMILY cAMP-binding domain-like 17 146 IPR018490 -
Vvi17g0796 180 CDD CAP_ED 28 159 IPR000595 -
Vvi17g0796 180 Gene3D Jelly Rolls 26 146 IPR014710 -
Vvi17g0796 180 ProSiteProfiles cAMP/cGMP binding motif profile. 28 111 IPR000595 -
Vvi17g0796 180 FunFam Cyclic nucleotide-gated ion channel 1 26 144 - -
Vvi17g0796 180 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0796 Vvi-Chr17 9024484 9026798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0796 10 177 Ion Channels AT3G48010 77.381 1.00e-92 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0796 K05391 - vvi:100253469 311.997