Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0793 ATGGTGTCAAGATCATCATATACAAGTTTCTTGGATGCGGCATCTGGGGACCTGTTGAATTTCCCTCAAACACCTAGAACCCTCCCAAGGGTGATGACAGTTCCAGGAATTATTTCTGATGGTGATGGAAACGGAAGTAACGATGAGGATTCAGACATTTTCTCATCCAAATGTCGTGAGAAGAAAATTATAGTGGCAAATTTTCTTCCTCTGCTTGCTCAAAAAGATTTAAACACCGGCAGATGGTGCTTCAGTTTTGATGAAGATGCGCTTTTGTTACAAATGAAGGATGGTTTCTCATCTGAAACTGATGTTGTTTATGTGGGATCTCTGAAGGTTGATGTAGATACCAGTGAGCAAGAAGAAGTTGCTGAGAGACTACTAGCAGAATTTAATTGTGTGCCTACTTTTCTTCCTCCTGACCTTCAGAAAAAGTTTTATCATGGGTTCTGCAAACAATATCTGTGGCCTCTCTTCCATTATATGCTCCCCATAAAGCGCTTCTATCGAGTTAAGCTTGGATTCTTCCTCCACAGTCCATTCCCCTCATCAGAAATCTACCGAACTCTGCCAGTCAGAGATGATATTCTAAAAGCATTGCTGAATGCAGACTTAGTTGGTTTTCATACATTTGATTATGCTCGCCACTTTTTGTCTTGTTGCAGTAGAATGCTAGGCCTGAACTATGAATCCAAGAGAGGTCACATTGGACTTGAGTATTTTGGCCGCACGGTTTATGTCAAAATTTTGCCTGTGGGAATTCATATGGGCCAACTTGAATCCGCACTAAATCTCCCCTCTACATCCATCAAGGTCAAAGAAATCCAAGAACAATTCAAGGGAAAAAAGATTATTCTGGGTGTTGATGATATGGACATATTTAAAGGACTAAGTCTAAAATTACTAGCCATGGAACACCTTCTGCAGCATTATGAAGAGTTGCGGGGTGAACTAGTCTTGGTTCAAATTGTAAATCCTGCAAGGAGCACAGGTAAAGATGTTCAGGAAGCAAAAAGGGAGACATATGCTATTACCGAAAGGATAAATGCAAATTTTGGTTTTCCAGGCTATGAACCGGTGGTCCTGATTGATCATCCTGTGCCTTTCTATGAGAAGACTGCCTATTATGCTTTGGCTGAATGTTGCATAGTAAATGCTGTGAGGGATGGAATGAACTTAATGCCATACAATTACATAGTTTGCAGGCAGGGGACTCCAAAAATAGATGAAGCTTTGGGAATTACCTCTGGGTCCTCTCGTACTAGTACACTTGTTGTCTCAGAATTCATAGGTTGCTCACCGTCACTTAGTGGTGCAATAAGAGTCAACCCATGGGATATTGATGCTGTGGCTGATGCACTAAACATAGCCATCACAATGCCTGGTTTAGAGAAGCAGTTGCGGCATGAGAAGCACTATCGGTACGTCAGCTCTCATGATGTGGCATATTGGGCATGCAGTTTTATGCAGGATTTGGAGCGGGCATGCAAAGATCACTACAGTAAACGTTGCTGGAGCATTGGTTTTGGTCTGAGTTTCAGAATTGTTGCTCTTTCTCCCAATTTTAGGAAACTTTCCCTTGACCATATTGTCAAAGCATATAAGAGGGCGAATAGAAGGGCGATATTTTTGGATTATGATGGAACAGTGGTTCCGCAATCTTCCATTGTTAAAACTCCTAGCCCTGAGGTTATCTCTATTCTAAATGACCTTTGCAATGACCCTAAGAACACTGTGTTTATTGTTAGTGGCAGGGGGAAAAACTCTCTGAGTGACTGGTTCGCTCAATGTCAGAATTTGGGAATAGCAGCTGAGCATGGATACTTCATTAGGTGGAGTCAGAGTTCCAATTGGGAATCAAGACCTTTACTCATGGACTTTGACTGGAAAAGAATTGCAGATCCTGTAATGCAATTATATACTGAGGCAACTGATGGCTCCTACATAGAGACTAAGGAGAGTGCCTTGGTATGGCACCACCAAGATGCTGACCCTGATTTTGGATCCTGCCAGGCAATGGAGTTGCTGGATCATCTTGAGAATGTTCTTGCAAATGAACCTGTGGAAGTTAAGAGGGGCCATCATATTGTTGAGGTTAAGCCACAGGGAGTCAGTAAAGGTCAGGTTACAGAGAAAATTCTTTCCACAATGATCAGTGATGGGAAACCACCAGATTTTGTGATGTGCATTGGGGACGATAGGTCAGATGAGGACATGTTTGAGAGCATATCAAGCACCATTTATAGTCCATCACTGCCTGCACCCCCAGAGATCTTTGCATGCACGGTCGGCCAAAAACCAAGCAAAGCTAGGTACTACCTTGATGATTCTGCAGATGTTTTGAAACTGCTCCAGGGCCTGGCCAGAGCTTCTAGTATGAAGCCCAAGTGTAGCACACAAATACAGTTCTCCTTTGAAAGTGTTGCTTGA 2430 0.4259 MVSRSSYTSFLDAASGDLLNFPQTPRTLPRVMTVPGIISDGDGNGSNDEDSDIFSSKCREKKIIVANFLPLLAQKDLNTGRWCFSFDEDALLLQMKDGFSSETDVVYVGSLKVDVDTSEQEEVAERLLAEFNCVPTFLPPDLQKKFYHGFCKQYLWPLFHYMLPIKRFYRVKLGFFLHSPFPSSEIYRTLPVRDDILKALLNADLVGFHTFDYARHFLSCCSRMLGLNYESKRGHIGLEYFGRTVYVKILPVGIHMGQLESALNLPSTSIKVKEIQEQFKGKKIILGVDDMDIFKGLSLKLLAMEHLLQHYEELRGELVLVQIVNPARSTGKDVQEAKRETYAITERINANFGFPGYEPVVLIDHPVPFYEKTAYYALAECCIVNAVRDGMNLMPYNYIVCRQGTPKIDEALGITSGSSRTSTLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNIAITMPGLEKQLRHEKHYRYVSSHDVAYWACSFMQDLERACKDHYSKRCWSIGFGLSFRIVALSPNFRKLSLDHIVKAYKRANRRAIFLDYDGTVVPQSSIVKTPSPEVISILNDLCNDPKNTVFIVSGRGKNSLSDWFAQCQNLGIAAEHGYFIRWSQSSNWESRPLLMDFDWKRIADPVMQLYTEATDGSYIETKESALVWHHQDADPDFGSCQAMELLDHLENVLANEPVEVKRGHHIVEVKPQGVSKGQVTEKILSTMISDGKPPDFVMCIGDDRSDEDMFESISSTIYSPSLPAPPEIFACTVGQKPSKARYYLDDSADVLKLLQGLARASSMKPKCSTQIQFSFESVA* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0793 809 CDD GT20_TPS 63 493 IPR001830 GO:0003824|GO:0005992
Vvi17g0793 809 Gene3D Glycogen Phosphorylase B; 261 477 - -
Vvi17g0793 809 FunFam Alpha,alpha-trehalose-phosphate synthase 262 477 - -
Vvi17g0793 809 Pfam Trehalose-phosphatase 543 777 IPR003337 GO:0003824|GO:0005992
Vvi17g0793 809 SUPERFAMILY HAD-like 540 788 IPR036412 -
Vvi17g0793 809 Gene3D Glycogen Phosphorylase B; 50 167 - -
Vvi17g0793 809 Gene3D - 539 652 IPR023214 -
Vvi17g0793 809 Gene3D - 669 802 IPR023214 -
Vvi17g0793 809 NCBIfam HAD-IIB family hydrolase 541 742 IPR006379 -
Vvi17g0793 809 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 166 789 IPR001830 GO:0003824|GO:0005992
Vvi17g0793 809 Pfam Glycosyltransferase family 20 166 493 IPR001830 GO:0003824|GO:0005992
Vvi17g0793 809 Pfam Glycosyltransferase family 20 61 164 IPR001830 GO:0003824|GO:0005992
Vvi17g0793 809 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 539 656 - -
Vvi17g0793 809 Gene3D Glycogen Phosphorylase B; 168 260 - -
Vvi17g0793 809 NCBIfam trehalose-phosphatase 537 788 IPR003337 GO:0003824|GO:0005992
Vvi17g0793 809 CDD HAD_TPP 541 782 - -
Vvi17g0793 809 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 497 - -
Vvi17g0793 809 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 669 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0793 Vvi-Chr17 8993328 8996192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0793 1 808 Trehalose Biosynthesis Gene Families AT1G23870 67.359 0.0 1221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0793 K16055 - vvi:100251811 1589.32