Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0789 ATGTCTAGAATTCCATCTCAACTCAAGCAAAAAGATGATATATTGATCCACCCACCCCCTCTATCTCCTGTCTCTTCATTCTCATACCCCTATAGTAGCACTATCTATGAAAAAGGATCAACCCCATCACCATCATCATCTGTTAGCAGAATTAGTCCAACACTTCTTCTGATTATAGTGATTCTAGCTATCATATTTTTCATCTCTGGCCTTCTCCATCTCCTTGTTAGATTTCTCATGAAGAGGCCATCTTCATTACTTTATCAATCTGGTAGGTACATAGAAACCTCTGGGTCTAATGCTTTCCAAAGACAACTGCAGCAACTCTTTCGCTTACATGACAGAGGTCTAGACCAAGCCTTCATAGATGCTCTACCTGTATTCACCTACAAGGATATTGTGGGCTTGAAAGAGCCATTTGATTGTGCAGTCTGTCTAAGTGAGTTTTCAGAAAATGATCAGCTGAGATTGCTTGTGATGTGTAGCCATGCTTTCCACATCAACTGCATAGACACGTGGCTCCTATCAAACTCTACATGTCCTCTATGTAGAGGGACTCTTTTAAGCTCTGGCCTTCCTCTTGAAAATCCGGTGCAGAATGGAGATGATCCCAGAGAAGCATCAAACACGTTTCCTAGTGAAGGAGATCATGAAGGGTGTTCCTCTAGTCAGAAGCCAGTGACTATGGAAGAAACTGGCAGCCAGAGGAGGGTCTTCCCTGTGAGACTTGGTAAGTTTAGAAGCTTGAATAATGAAGGAACACAAAGTGGGGAGAGAGAACAAGAGGGGACTAGCAGCTCCTATTTGGATGCCAGAAGATGCTACTCAATGGGGCCATGCCAGTATGTGGTTGGCGACTCAAACCTTCAAGTGGCTTTGTCTCATGACAATGGTGCTAGCAGTGAGGAGAAGCATGCCAAAGCAAGAGACCAACATGGGAATTGTTCAACTGATCATGAGGATGCGGAAGGGAAGAAAATCAGCAGTAGGATCAGAGGTGAGAGTTTCTCAGTCTCCAAGATCTGGCTCTGGCCCAAGAAGAACAAGGTCCCAAGCTCTTCAGACCCCCATATGAGTCTTCCATTTGCCCCATAA 1095 0.4447 MSRIPSQLKQKDDILIHPPPLSPVSSFSYPYSSTIYEKGSTPSPSSSVSRISPTLLLIIVILAIIFFISGLLHLLVRFLMKRPSSLLYQSGRYIETSGSNAFQRQLQQLFRLHDRGLDQAFIDALPVFTYKDIVGLKEPFDCAVCLSEFSENDQLRLLVMCSHAFHINCIDTWLLSNSTCPLCRGTLLSSGLPLENPVQNGDDPREASNTFPSEGDHEGCSSSQKPVTMEETGSQRRVFPVRLGKFRSLNNEGTQSGEREQEGTSSSYLDARRCYSMGPCQYVVGDSNLQVALSHDNGASSEEKHAKARDQHGNCSTDHEDAEGKKISSRIRGESFSVSKIWLWPKKNKVPSSSDPHMSLPFAP* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0789 364 MobiDBLite consensus disorder prediction 296 328 - -
Vvi17g0789 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 190 IPR013083 -
Vvi17g0789 364 SMART ring_2 142 183 IPR001841 -
Vvi17g0789 364 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vvi17g0789 364 MobiDBLite consensus disorder prediction 194 236 - -
Vvi17g0789 364 CDD RING-H2_EL5-like 141 184 - -
Vvi17g0789 364 SUPERFAMILY RING/U-box 121 188 - -
Vvi17g0789 364 MobiDBLite consensus disorder prediction 298 328 - -
Vvi17g0789 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 46 342 - -
Vvi17g0789 364 MobiDBLite consensus disorder prediction 214 231 - -
Vvi17g0789 364 FunFam RING-H2 finger protein ATL46 104 189 - -
Vvi17g0789 364 Pfam Ring finger domain 141 184 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0789 Vvi-Chr17 8976296 8977390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0789 40 354 C3H Transcription Factor Family AT2G18650 41.860 7.30e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0789 - - vvi:104882287 687.182