Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0781 ATGCATGGGCGGGAAGGTGAGGACAGGAAACGGAGTCGGCACATGTGGTCGGTCCCTACTCGTGGCACCGCGTCTGTAGCTGATGATTCTTCGACATCTACAGCTAATTCTTTCTTAAAGGATTCCCCACCTTTCATTGGAATAATCCGTTGGTTAACATCAAGTAAGAATAATATAAGGTTAGGTGTGAATTGGCTTTATCGACCTTCTGAAGTAAAGCTTGGCAAAGGCATCCTGCTGGAAGCTGCGCCAAACGAAGTTTTCTATACCTTTCATAAGGATGAGATTCCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTCCTTCCTAAAGGTGATGAACTTCCTTCGGGAATATCCTCGTTTGTGTGCAGGCGGGTTTTTGACGTTGCAAACAAGTGTTTATGGTGGTTAACTGATCAAGATTATATTAATGAGCGACAGGAAGAAGTAGATAAGTTATTATATAAAACGCGAATAGAAATGCATGCAACAGTGCAGCCAGGTGGTCGTTCTCCAAAACCAATGAGTGGTCCAACATCAACATCGCAAATAAAACCTGGTTCTGATAGTAGTACTCAAAACTGTGCCACTTCCTTGCCTTCCCAAGTTAAGGGAAAGAAAAGGGAGCGAGGAGATCAGGGCTCTGAGCCCATTAAACGTGAGCGCCCTTCAAAAACTGATGATGGGGATTCTGGTCACTCTAGACCAGAGAGCGTTTGGAAATCTGAGATTGCTAAAATTACAGAAAGGGGAGGGCTTGTTGATTCAGAAGGGGTTGAGAGACTTGTGCAACTCATGCAGCCTGAGAGAGCTGAGAAGAAAATAGACTTGATTGGCCGTTCAATTCTTGCAGGTGTTATAGCTGCCACAGAGAAGTATGATTGCCTTGGTCGATTTGTCCAGCTCAGGGGCTTGCCTGTATTGGATGAATGGCTCCAAGAGGCACATAAAGGAAAGATTGGTGATGGTAGTAGCCCCAAGGACAGTGATAAATCTGTTGAGGAATTCCTATTGGTTTTACTTCGTGCACTCGATAAGCTGCCTGTGAATCTTCAAGCCCTTCAAATGTGTAACATTGGCAAATCTGTTAATCATTTACGTAGTCATAAAAACTTAGAAATTCAGAAAAAAGCAAGGAGTTTAGTTGATACATGGAAGAAACGTGTTGAGGCAGAAATGAATATTAATGATGCGAAGTCTGGTTCAAGTCAGGCTGTTGCATGGTCTTCGAGGCCACGTCTTTCTGAAGTTTCTCATGGTGGGAACAGACACTCTGGAGGCTCCTCTGAGATTGCCATGAAGAGCTCAGTCACACAGCTTTCTTCATCTAAAACAGCTCCAGTTAAGCTTGTACAGGGGGAAATTGCCAAGTCTGGGTCTGCATCCCAGGGATTTACAAAATCAGCAACATCACCTGCATCAGTGAGTACTAGCTTAAAGGATGGTCAAACCCGCGTTGCTGGTGCTGGTAATGCCTCTGATCCTCCTCTAACGACAGTAAGGGATGAGAAAAGCAGCAGTTCTAGTCAATCTCATAACAATAGTCAGTCTTGTTCGAGTGACCATGCCAAAACTGTGGGTTTCTCAGGGAAGGAAGATGCTAGGAGCTCGACAGCTATGTCAATGAGTGTGAGCAAGACCTCTGGTGGTGCTTCACGGCATCGGAAATCAGTCAATGGCTATCCAGGGCCTGCTGTGTCTGGAGTGCAAAGGGAAACCGGTTCAAGTAGAAGTTCTTCCTTTCAAAGAAATCCTGCCTCAGAAAAAGTATCACAGTCTGGATTGACATGCGATAAGGCTTTTGATGTCCCCACTGTTGAGGGAAACAGTCACAAACTGATTGTCAAGATCCCCAATCGAGGCCGCAGTCCTGCACAAAGTGCGAGTGGTGGATCTTTTGAAGATCCTTCCATGGTGAACAGTCAGGCGTCTTCTCCCGTGCTTTCAGGGAAGCATGATCAATCTGACCGTAATCTGAAGGAAAAGAGTGATGTTTATCGAGCTAATAATACTTCGGATGTGAATACTGAGTCATGGCAAAGCAATGATTTCAAAGATGCAATGACTGGGTCTGATGAAGGTGATGGATCACCTGCTACTCTTCCTGATGAAGAGCGCTCCAGGACTGGTGATGACACTAGGAAAATCAAAACTGCCTCGTCATCATCAGGAATTGAACCCAAGTCAGGGAAATTGGTTGAGGCTTCTTTCACCTCCATGAATGCTTTAATTGAAAGTTGTGTCAAGTGTGAGGCTAATGCATCTGTTTCAGTTGTTGATGATGTCGGAATGAATCTGCTTGCTAGTGTGGCTGCCGGAGAAATGGCCAAACGAGAGTCAGTTTCACCTGCTGATTCTCCACTAAGAAATACTGCTGTTATTGAAGATTCTTCTGCAGGCAATGATGCGAAATCAAAACCAACAGGAGATGACATCTTGAGAGAACAAAGTCAGTCTAACTACGGTCCCACCGGTGATACTGAGAAGCAGGGTTTTTGGGCTAAGGATGGATTGCATCATTTACCTAAACATGCATTGACTAACAGAGAGAACAATGAACATATTAATTCTACCAGTATTGATTTAGTAAGAACTTCAGAGCTGTGTTCAGAAATCAACAGAAAATCAGATGAAACAGTGGTTGGTGCTTCTGTGACTGCATCCCCTGTGAGCACAACAGAAAAAGGCAGTGATGATGAACAAGGGAAACAACTTCATGAGAAGAAGGCAGCTGTTGATGGAGTAAATGTTGATGGTATTCCAGATACTAAACCAAAGGTGAGCAGTTCTTCATTGGCTGAAGATAAAGTCAATGATGTCCTTCCCTGTGTAGAATTGAAGGAAGAACAGTCATCATATGCATCATTAGAACCTGATGGTGAAAAGAATAATGTTAATGAAGGTTTGAATACAGAGCAAAAGCCACCAGCTTCCATGATACCTTCGGACTTTGTGAAAGGAACTGAAAAGGAAGTGCCACTTCCTTCTGGTTCAGGTAAAGATTTGGTCCCAGAAAATGTTGATCAAATGAAGGCTGAAAAGGCTGATGAAATTTGTGTCTCAAATCATGCTAATCAGATGGAAGAACAGAGAATTGAGCCAAAAAATCATGCTTCAACTGCTGCTGAGGATCGAGTTGTGGCTGGTTTGTATTCAGTAGCAACTGATCACAAGAGGGAACTTATGGAAGAGAATTTAGGAAATAAAGAGGTTCTTGAGAACTGTTCTAGTGGGCAAGCTCCTTACAAACAATCACCCACATTTCCTGTGTTAGAAGTGGAACAGCTTGTAAGGCCTAGAGGATCCAAGTTGCCAGGTGATGAAGCGGATGAAACAGAGGAATGTGCTTCCACCACTGCAGATGCTTCTTCCTTTTCAGCTACAGGGGGATCAGATGTGGATGGAAAACTGGAATTTGATTTGAATGAAGGTTTTAATGCAGATGATGGGAAATTTGGGGAACCAGTAAATGTAGGTACACCTGGATGTTCAGCCGCTGTTCATTTAATTAGCCCATTGCCTTTTCCTGTTTCATCAATGTCCAGTGGGCTTCCAGCTTCAATTACAGTGACTGCTGCTGCTAAAGGGCCTTTTGTTCCTCCTGATGATCTATTAAGGAGTAAAGGGGAACTTGGGTGGAAAGGATCCGCTGCTACTAGTGCTTTCCGACCAGCTGAACCAAGAAAGACACTTGAGATGCCATTGAATGCACTGAATGTTCCATCTGACGCTACCAGTGGTAAACAAAATCGTCCTTTGTTGGATTTTGACCTGAATATGCCCGATGAAAGAATTCTCGAGGACATGACTTCTCGAAGCTCTGCTCAGGAGACAAGCTCTACATGTGATCTTGTTAGTAGTCGTGATTTGGCACATGACAGACCTATGGGTTCTGCACCCATTCGTTGCTCTGGGGGCCTTGATCTTGATCTGAACCAAAGTGATGAAGTGACTGATATGGGGCAGCACTCAGCAAGCAACTCTCATAGATTGGTGGTCCCCCTTCTGCCAGTTAAATCTTCTTCATCTGTTGGATTTCCTAATGGTGAGGTGGTTGTCCGAAGAGACTTTGATTTGAACAATGGACCTGTTCTTGATGAGGTAAGTGCTGAACCATCATCTTTTAGCCAACATGCCCGAAGCAGCATGGCATCCCAGCCACCTGTTGCTTGCCTTAGAATGAACAATACAGACATAGGGAACTTCTCATCTTGGTTTCCTCCGGCAAACAATTATTCAGCTGTCACAATTCCATCCATCATGCCTGATAGGGAACAACCATTTCCAATTGTTGCAACTAATGGGCCACAAAGGATAATGGGTCTTTCGACTGGTGGAACCCCATTTAATCCTGATGTCTACAGGGGCCCTGTATTGTCATCTTCTCCTGCAGTTCCCTTCCCCTCAACCCCATTTCAATATCCAGTATTCCCTTTTGGGACCAATTTTCCCCTGCCACCAGCTACTTTTTCAGGCAGTTCAACTTCTTTTACAGATTCCTCATCTGCTGGGAGGCTTTGCTTCCCTGCTGTAAATTCCCAGTTAATTGGACCAGCTGGTACAGTTCCGTCACATTACCCCAGGCCTTATGTGGTGAACCTTTCAGATGGCAGCAACAGTGGTGGTCTTGAGAGCAATAGGAGATGGGGAAGGCAGGGCCTAGACCTCAATGCAGGCCCTGGAGGTCCAGAAATTGATGGGAGAGAGGAGTCCGTGGTTTCCCTTGCATCAAGGCAACTCTCTGTTGCCAGTTCACAGGCCCTAGCAGGGGAGCAAGCAAGGATGTACCATGCGGCTGGTGGTGTTTTGAAGAGGAAGGAGCCTGAGGGAGGATGGGATACAGAAAGGTTTAGTTACAAGCAATCCTCATGGCAGTAA 4884 0.4486 MHGREGEDRKRSRHMWSVPTRGTASVADDSSTSTANSFLKDSPPFIGIIRWLTSSKNNIRLGVNWLYRPSEVKLGKGILLEAAPNEVFYTFHKDEIPAASLLHPCKVAFLPKGDELPSGISSFVCRRVFDVANKCLWWLTDQDYINERQEEVDKLLYKTRIEMHATVQPGGRSPKPMSGPTSTSQIKPGSDSSTQNCATSLPSQVKGKKRERGDQGSEPIKRERPSKTDDGDSGHSRPESVWKSEIAKITERGGLVDSEGVERLVQLMQPERAEKKIDLIGRSILAGVIAATEKYDCLGRFVQLRGLPVLDEWLQEAHKGKIGDGSSPKDSDKSVEEFLLVLLRALDKLPVNLQALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSSQAVAWSSRPRLSEVSHGGNRHSGGSSEIAMKSSVTQLSSSKTAPVKLVQGEIAKSGSASQGFTKSATSPASVSTSLKDGQTRVAGAGNASDPPLTTVRDEKSSSSSQSHNNSQSCSSDHAKTVGFSGKEDARSSTAMSMSVSKTSGGASRHRKSVNGYPGPAVSGVQRETGSSRSSSFQRNPASEKVSQSGLTCDKAFDVPTVEGNSHKLIVKIPNRGRSPAQSASGGSFEDPSMVNSQASSPVLSGKHDQSDRNLKEKSDVYRANNTSDVNTESWQSNDFKDAMTGSDEGDGSPATLPDEERSRTGDDTRKIKTASSSSGIEPKSGKLVEASFTSMNALIESCVKCEANASVSVVDDVGMNLLASVAAGEMAKRESVSPADSPLRNTAVIEDSSAGNDAKSKPTGDDILREQSQSNYGPTGDTEKQGFWAKDGLHHLPKHALTNRENNEHINSTSIDLVRTSELCSEINRKSDETVVGASVTASPVSTTEKGSDDEQGKQLHEKKAAVDGVNVDGIPDTKPKVSSSSLAEDKVNDVLPCVELKEEQSSYASLEPDGEKNNVNEGLNTEQKPPASMIPSDFVKGTEKEVPLPSGSGKDLVPENVDQMKAEKADEICVSNHANQMEEQRIEPKNHASTAAEDRVVAGLYSVATDHKRELMEENLGNKEVLENCSSGQAPYKQSPTFPVLEVEQLVRPRGSKLPGDEADETEECASTTADASSFSATGGSDVDGKLEFDLNEGFNADDGKFGEPVNVGTPGCSAAVHLISPLPFPVSSMSSGLPASITVTAAAKGPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKTLEMPLNALNVPSDATSGKQNRPLLDFDLNMPDERILEDMTSRSSAQETSSTCDLVSSRDLAHDRPMGSAPIRCSGGLDLDLNQSDEVTDMGQHSASNSHRLVVPLLPVKSSSSVGFPNGEVVVRRDFDLNNGPVLDEVSAEPSSFSQHARSSMASQPPVACLRMNNTDIGNFSSWFPPANNYSAVTIPSIMPDREQPFPIVATNGPQRIMGLSTGGTPFNPDVYRGPVLSSSPAVPFPSTPFQYPVFPFGTNFPLPPATFSGSSTSFTDSSSAGRLCFPAVNSQLIGPAGTVPSHYPRPYVVNLSDGSNSGGLESNRRWGRQGLDLNAGPGGPEIDGREESVVSLASRQLSVASSQALAGEQARMYHAAGGVLKRKEPEGGWDTERFSYKQSSWQ* 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0781 1627 ProSiteProfiles TFIIS N-terminal domain profile. 308 394 IPR017923 -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1 15 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 958 979 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 459 596 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 500 526 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1539 1569 - -
Vvi17g0781 1627 ProSiteProfiles BAH domain profile. 22 140 IPR001025 GO:0003682
Vvi17g0781 1627 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 296 405 IPR035441 -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 776 833 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1273 1288 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 205 244 - -
Vvi17g0781 1627 SMART TFS2_5 314 393 IPR003617 GO:0005634
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 624 654 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 571 596 - -
Vvi17g0781 1627 Gene3D - 32 242 IPR043151 -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 616 730 - -
Vvi17g0781 1627 Pfam TFIIS helical bundle-like domain 342 391 IPR017923 -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 165 244 - -
Vvi17g0781 1627 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 259 395 IPR035441 -
Vvi17g0781 1627 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1627 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 399 447 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 882 908 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 399 413 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 701 717 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1606 1627 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 670 689 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 951 983 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 655 669 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 814 828 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 175 203 - -
Vvi17g0781 1627 SMART BAH_4 16 140 IPR001025 GO:0003682
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 882 897 - -
Vvi17g0781 1627 CDD TFIIS_I 316 392 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 533 556 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 423 447 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1271 1303 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 786 806 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 1 35 - -
Vvi17g0781 1627 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0781 Vvi-Chr17 8832529 8841649 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi17g0781 Med26 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0781 - - vvi:100248456 3170.18