Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi17g0776 | ATGGCAACTTTTGCAGGGACTACCCAGAAGTGTAAGGCCTGTGAGAAGACTGTGTACTTGGTGGATGAGCTCACTGCTGATAACAAGGTCTACCACAAGGCCTGCTTCAGATGCCACCACTGCAAGGGCACTCTCAAGCTGAGTAACTATTCCTCCTTTGAGGGTGTGTTGTATTGTAAACCTCACTTTGATCAATTGTTTAAGATGACTGGCAGCTTGGATAAGAGTTTTGAAGGAGCTCCCAAGACCGTCAGATCTGTTGATCAGGGCCAGACAAATAGCAAAGTTTCAAGTATGTTTGCTGGAACTCAAGAGAAGTGTGTTGCCTGCAAAAAAACCGTTTACCCCATTGAAAAGGTGGGGGTGGATGGCACGTCTTACCATAAGGCTTGCTTCAGGTGCACCCATGGAGGCTGTACAATCAGCCCATCAAACTACATAGCCCATGAGCATCGACTCTACTGTAGGCACCACCATTCCCAACTCTTCAAGGAGAAGGGGAACTTCAGCCAACTGGACAAGCAGGAGCAAGTTAAAGGGGGTGACTGA | 549 | 0.4791 | MATFAGTTQKCKACEKTVYLVDELTADNKVYHKACFRCHHCKGTLKLSNYSSFEGVLYCKPHFDQLFKMTGSLDKSFEGAPKTVRSVDQGQTNSKVSSMFAGTQEKCVACKKTVYPIEKVGVDGTSYHKACFRCTHGGCTISPSNYIAHEHRLYCRHHHSQLFKEKGNFSQLDKQEQVKGGD* | 183 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi17g0776 | 182 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
| Vvi17g0776 | 182 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
| Vvi17g0776 | 182 | SMART | lim_4 | 106 | 158 | IPR001781 | - | |
| Vvi17g0776 | 182 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
| Vvi17g0776 | 182 | Gene3D | Cysteine Rich Protein | 101 | 171 | - | - | |
| Vvi17g0776 | 182 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
| Vvi17g0776 | 182 | FunFam | LIM domain and actin-binding 1 | 5 | 75 | - | - | |
| Vvi17g0776 | 182 | ProSiteProfiles | LIM domain profile. | 105 | 165 | IPR001781 | - | |
| Vvi17g0776 | 182 | FunFam | LIM domain and actin-binding 1 | 101 | 171 | - | - | |
| Vvi17g0776 | 182 | CDD | LIM2_SF3 | 107 | 167 | - | - | |
| Vvi17g0776 | 182 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 171 | - | - | |
| Vvi17g0776 | 182 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
| Vvi17g0776 | 182 | CDD | LIM1_SF3 | 7 | 68 | - | - | |
| Vvi17g0776 | 182 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
| Vvi17g0776 | 182 | PANTHER | OS06G0237300 PROTEIN | 4 | 91 | - | - | |
| Vvi17g0776 | 182 | Pfam | LIM domain | 107 | 162 | IPR001781 | - | |
| Vvi17g0776 | 182 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
| Vvi17g0776 | 182 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 99 | 132 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi17g0776 | Vvi-Chr17 | 8783574 | 8786200 | Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Vvi17g0776 | LIM | 2.6e-10 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi17g0776 | K09377 | - | vvi:100260380 | 390.963 |