Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0772 ATGTCGCAGAAGCGCCACGCCGAGGATGGGAAGGCTCGATCGGAGGGGGGTTGTCCCGAGGATAAGAAGAGAAAGGTTCCTAGTTTGAAAAATGCAATTCTGGAAGTAATGAAGATGCAGTCATCGGTCCAGCATTTGATGGAGCCGATTCTGGAGCCTTTGATTCGTAAAGTGGTAAAAGAGGAAGTTGAAACGGCTCTGAGAAAGCATTTAAGCAATATGAAGCGGAATTTCGAGAAGGAGTTACATCCTTTTGAATCAAGAAGCTTACAATTACAATTCTCAAATGCTCTCTCTCTTCCAGTATTCACTGGTACTCGAATTGAAGGGGAAGATTGCTCTTCCATTCAAGTTGCTTTAGTTGATGGTCTTACTGGGGAAGTTGTTAAGTCTGGGCCTGAATCCTCAGCAAGGGTTGAAATAGTAGTCCTTGAGGGAGATTTTGATGGTGATGAAGGAGACAATTGGACACTTGAAGAGTTTAAGAATAACATTGTTAGAGAAAGGGAAGGAAAGAAACCCCTACTTACAGGGGATGCATTTTTAAATCTTAAAGATGGCGTTGGTTTTGTTAGTGAGATCTCCTTTACTGATAATTCAAGCTGGACAAGAAGCCGGAAGTTCAGGCTAGGGGCAAGAGTTGTGGATAACTCTGATGGAACTAGAATACGAGAAGCAAAGACAGAATCATTCATTGTCAGGGATCACCGGGGAGAATTGTACAAGAAGCACCACCCTCCATCTCTGATGGACGAAGTGTGGCGATTAGAGAAGATTGGAAAAGATGGAGCTTTCCACAAGCGTTTGAGTAGGGAAAGCATCACTACTGTAAAGGATTTTCTGACTCTACTCTATTTAGACTCACCAAGGCTCCGAAATATCCTTGGCACAGGTATGTCAACTAAGATGTGGGAAGTCACTGTGGAACATGCTCGGACGTGTGTAATTGATAAGAGGATTTTTATGTACTGTCCTCCTGGCCCTCAGCAAAAATCTGGTGTGGTTTTCAATACTGTGGGACAACTGATGGGGCTGCTTTCAGAATGCCAGTACATTCCCATTGATAAGCTGTCTGAAACTGAAAAGGTTGATGCCCATAACTTGATCGGTACTGCATTTAAACGCTGGGGAGAAGTTGTCTCTTTTGAGGATGAGAGCTCTCTTACGGGTGGTTCTTCACATTTAACAGATGTTCACCACCCAAGCTCACCCAGAACGGAGAGTTCAAATGGCAGCAAATTTCTGACTTCTCACAACATTGGTGGATTTGATTATCCACATCCGAGTGCCTCATCCCCAGATATGATTCCCTATAGTTTGGATGATTATCCCTTGCACACCATTGACAATATGGATCTTAGATATGATCAGGCCTTAAGTTTCCCAGGCCAAGTGACCAGCTCAATGATCTGTGATACAGAGTCAATGACTCAGGCTTTCTGTGATGATAATCATCTGGGATTTTTTGATGACCTTCAATCACAAACCAAACCACAGTCCCATCTACAGAGTGCTGTTAATGGCGATCTACACAGTGCTGTCAGTGGTTTTCTCATCACTCGTTCTGCAACAATTGAAGCACAAAGGAGGTGGAGAATGCTAGTAACCGTCATGAAGTTTTCAATATGTATGAATGTGGCTTTGAAGAAGACCCACCTTCGAGCTATGCACAGATACAGTTGA 1683 0.4343 MSQKRHAEDGKARSEGGCPEDKKRKVPSLKNAILEVMKMQSSVQHLMEPILEPLIRKVVKEEVETALRKHLSNMKRNFEKELHPFESRSLQLQFSNALSLPVFTGTRIEGEDCSSIQVALVDGLTGEVVKSGPESSARVEIVVLEGDFDGDEGDNWTLEEFKNNIVREREGKKPLLTGDAFLNLKDGVGFVSEISFTDNSSWTRSRKFRLGARVVDNSDGTRIREAKTESFIVRDHRGELYKKHHPPSLMDEVWRLEKIGKDGAFHKRLSRESITTVKDFLTLLYLDSPRLRNILGTGMSTKMWEVTVEHARTCVIDKRIFMYCPPGPQQKSGVVFNTVGQLMGLLSECQYIPIDKLSETEKVDAHNLIGTAFKRWGEVVSFEDESSLTGGSSHLTDVHHPSSPRTESSNGSKFLTSHNIGGFDYPHPSASSPDMIPYSLDDYPLHTIDNMDLRYDQALSFPGQVTSSMICDTESMTQAFCDDNHLGFFDDLQSQTKPQSHLQSAVNGDLHSAVSGFLITRSATIEAQRRWRMLVTVMKFSICMNVALKKTHLRAMHRYS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0772 560 PANTHER OS02G0177800 PROTEIN 2 460 IPR012416 GO:0005516
Vvi17g0772 560 MobiDBLite consensus disorder prediction 386 413 - -
Vvi17g0772 560 MobiDBLite consensus disorder prediction 1 25 - -
Vvi17g0772 560 Pfam Calmodulin binding protein C-terminal domain 320 382 IPR046829 -
Vvi17g0772 560 Pfam Calmodulin binding protein central domain 249 314 IPR046830 -
Vvi17g0772 560 Pfam Calmodulin binding protein-like N-terminal domain 90 236 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0772 Vvi-Chr17 8761253 8767927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0772 1 362 Calmodulin-binding Proteins AT5G62570 63.260 9.71e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0772 - - vvi:100255354 1129.39