Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0767 ATGGGCGGTAACGGCAAGCATAGGTGGAAAATTTCATTTCGATCGTCTTCCTCAATGCCGAAGCAGTCTCCTAAGGAGTTCATGTGTCCCATTTCTGGGTCTTTGATGGCTGACCCAGTGGTGGTTGCGTCGGGTCAAACTTTTGAGAGGATTTCTGTTCAGGTGTGCAGGAACTTGGCGTTTGTTCCGGTTTTGGGTGACGGGTCTAGGCCTGATTTCACTGTTGTCATTCCCAATTTGGCTATGAAGTCCGCGATTCTGAATTGGTGTGCTGCGTCCCGCGTGGACCGTCCGACGGAGCCGGAGTATGGATCGGTGGAGACGCTTGTGAGGGCGGCAATGGGGTCGGACGGAGATGATAGGTTTGAGACTTCGGAGAAGGAGTTGCTTCGAGCTGTGCCGGGGAACCCGCCGGTCATGTTCTCACACGCCGCCACGGAGGTGAATCACCGGCCCAATCATTTCTACTCCAGCAGCTCTGAGGAATCTGTCATCGCTGCCGTTCCGGCGACTCCCCTCCCCCTCACCACTCGACCCTCCTGTTATTCATCGTTTTCATCGTCTTCGGACGAAGCCCTTAGCCTGGCCGTGACTCTAGACCCCATTTCTTCCGAGGAAGAAGAGATTTTGGGGAAATTGAAGAGCTCTGAAGTTCATGAGCAGGAGGAAGGGCTGATTTTGCTGAGGACGATTACGAGAACGAAGGAGGATCTTAGGGTTTCGCTCTGTACCCCTGGAGTGCTCTCCGCCCTCCGGCTGTTACTGAATTCAAGGTACGGGGTCGTGCAGACCAACGCCGTCGCATCGGTGGTGAATCTCTCTTTAGAGAAGCCGAACAAGGCAAAAATCGTACGGTCCGGAATCGTTCCGCCGTTGATCGACCTGTTGAAGGGCGGACTCCCGGAGTCGCAGGAGCACGCCGCCGGGGCACTCTTCAGTCTAGCCATAGAAGACAACAACAAGACGGCGATTGGGGTGATGGGCGCGTTGCCGCCGCTGCTCCACTCGCTCAGATCGGAGAGCGAGCGGACTCGCCACGACTCGGCTCTGGCACTGTACCATCTCTCACTCGACCAGAGCAACCGAGTCAAACTCGTGAAACTCGGTGCCATACCGACTCTACTCGCCATGGTGAAGTCCGGCGACCTGGCGAGCCGCGCTCTGCTCATACTCTGCAACATGGCCGCCTCCGGCGATGGGCGCTCTGCAATGCTGGACGCGAATGCCGTGGATTGCTTGGTGGGGCTGTTGAGAGGAAAGGAACTAGACTCGGAGTCAACTCAAGAAAACTGCGTGGCCGTGCTATACTTGCTGAGCCATGGGAGCATGAGGTTCAAGGGGTTGGCAAGAGAAGCAAGAGCAGTAGAGGTTTTACGGGAGGTTGAAGAGAGAGGAAGCGGGAGAGCAAGAGAGAAAGCGAAGAGGATGTTGCAGATGATGAGGGGACGAGACGAGGAAGAAGAAGTGGACTGGGAAGGGGTTCTGGAATCGGGGGCGTTGAGTCAGCCACGGTATCGAGTGGGTGGTGCCGGCAAACAGCACATTCATGGAGCATACTCCACTGAATTTTGA 1572 0.5598 MGGNGKHRWKISFRSSSSMPKQSPKEFMCPISGSLMADPVVVASGQTFERISVQVCRNLAFVPVLGDGSRPDFTVVIPNLAMKSAILNWCAASRVDRPTEPEYGSVETLVRAAMGSDGDDRFETSEKELLRAVPGNPPVMFSHAATEVNHRPNHFYSSSSEESVIAAVPATPLPLTTRPSCYSSFSSSSDEALSLAVTLDPISSEEEEILGKLKSSEVHEQEEGLILLRTITRTKEDLRVSLCTPGVLSALRLLLNSRYGVVQTNAVASVVNLSLEKPNKAKIVRSGIVPPLIDLLKGGLPESQEHAAGALFSLAIEDNNKTAIGVMGALPPLLHSLRSESERTRHDSALALYHLSLDQSNRVKLVKLGAIPTLLAMVKSGDLASRALLILCNMAASGDGRSAMLDANAVDCLVGLLRGKELDSESTQENCVAVLYLLSHGSMRFKGLAREARAVEVLREVEERGSGRAREKAKRMLQMMRGRDEEEEVDWEGVLESGALSQPRYRVGGAGKQHIHGAYSTEF* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0767 523 PANTHER U BOX DOMAIN-CONTAINING 23 483 - -
Vvi17g0767 523 SMART arm_5 397 440 IPR000225 GO:0005515
Vvi17g0767 523 SMART arm_5 358 396 IPR000225 GO:0005515
Vvi17g0767 523 SMART arm_5 276 316 IPR000225 GO:0005515
Vvi17g0767 523 SMART arm_5 317 357 IPR000225 GO:0005515
Vvi17g0767 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 96 IPR013083 -
Vvi17g0767 523 FunFam RING-type E3 ubiquitin transferase 204 480 - -
Vvi17g0767 523 FunFam RING-type E3 ubiquitin transferase 7 97 - -
Vvi17g0767 523 Pfam U-box domain 24 92 IPR003613 GO:0004842|GO:0016567
Vvi17g0767 523 MobiDBLite consensus disorder prediction 1 24 - -
Vvi17g0767 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Vvi17g0767 523 SUPERFAMILY ARM repeat 209 484 IPR016024 -
Vvi17g0767 523 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Vvi17g0767 523 SUPERFAMILY RING/U-box 9 96 - -
Vvi17g0767 523 Gene3D - 203 481 IPR011989 -
Vvi17g0767 523 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Vvi17g0767 523 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 287 324 IPR000225 GO:0005515
Vvi17g0767 523 Pfam Armadillo/beta-catenin-like repeat 278 315 IPR000225 GO:0005515
Vvi17g0767 523 Pfam Armadillo/beta-catenin-like repeat 319 356 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0767 Vvi-Chr17 8702451 8704022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0767 1 512 U-box Gene Family AT5G65200 53.467 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0767 - - vvi:100244998 974.541