Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0759 ATGGAGACTAAAATACCATGTCGGCAGCTCTTCATCGACGGCAAATGGGTTGAACCCATCACGAAGAGGCGCATCCCCGTCATCAATCCCGCCACTGAGCAGACCATCGGCCTTATTCCGGCGGCCACTGGTGAAGATGTGGAGCTTGCTGTGGATGCTGCCCGAAGAGCCTTTGCCAGGAATAAGGGGGCAGATTGGGCTAAGGCGCCTGGTGCTGTTCGTGCTAAGTATTTGCGTGCCATTGCTGCCAAGATAACAGAGAGAAAGACTGAATTGGCCAAACTAGAGGCACTTGATTGTGGAAAACCCCTGGATGAAGCAGCATGGGATATTGATGACGTTGCTTCTTGTTTTGAGTACTTTGCAGACCACGCTGAAGCTTTAGATGCACAGCAAAAGGCTCCTTTGTCACTTCCTATGGAGACATTTAAGTGTCATATTCTTAAGGAGCCCGTTGGTGTTGTTGGATTGATTACACCATGGAATTACCCACTACTGATGGCTACATGGAAAGTGGCTCCTGCCCTAGCTGCTGGTTGCACAGCAATACTAAAGCCATCTGAGTTGGCTTCTGTGACTTGTTTAGAGCTGGCTGATGTGTGTATAGAGGTGGGTCTGCCACCTGGCGTCCTTAATATTCTGACTGGACTGGGCTCTGAAGCTGGTGCTCCATTGTCATCTCATCCCCATGTTGACAAGATTGCATTTACTGGAAGCACTGTTACTGGGAGCAAGATCATGACAGCTGCAGCTCAATTGGTGAAGCCTGTTTCATTGGAGCTTGGTGGAAAGAGTCCCATTCTTGTGTTTGAGGATGTCGACCTTGACAAGGCTGCTGAATGGACTGCCTTTGGTTGCTTTTGGACAAATGGCCAAATATGTAGTGCAACATCTCGTCTTCTTGTGCATGAAAGCATTGCAGCAGAATTTTTAGACAAGCTTGTGAAATGGACTAAAAATATCAAGATTTCAGATCCCTTTGAAGAAGGTTGTAGACTTGGTCCTGTTGTTAGTAGAGAGCAGTATGAGAAGATATTGAAGTTGGTTTCAACAGCTAAGAGTGAGGGTGCAACAATATTGTGTGGTGGGGGTCGTCCCCAGCATTTGAAGATGGGGTTCTACATTGAACCAACCATTATAAGTGATGTGACTACTTCCATGCAAATTTGGAGAGAGGAGGTTTTCGGGCCTGTCCTTTGTGTTAAAACATTTAGCTCCGAAGATGAAGCCATTGAACTAGCAAATGACACCCAGTATGGCTTAGCAGGTGCTGTAATTTCAAATGATCTGGAGAGGTGTGAACGTGTGTCAAAGGCCCTTAATGCAGGGATTGTATGGATCAACTGCTCACAGCCATGCTTCTGTCAAGCTCCATGGGGAGGAAACAAGCGTAGTGGTTTTGGGCGTGAACTAGGGCCACGGGGACTTGATAATTACTTAAGTGTGAAGCAGGTCACTCAGTACCTCTCCAATGAACCATGGGGCTGGTACCAGTCTCCTTCAAAGCTGTGA 1512 0.4722 METKIPCRQLFIDGKWVEPITKRRIPVINPATEQTIGLIPAATGEDVELAVDAARRAFARNKGADWAKAPGAVRAKYLRAIAAKITERKTELAKLEALDCGKPLDEAAWDIDDVASCFEYFADHAEALDAQQKAPLSLPMETFKCHILKEPVGVVGLITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELADVCIEVGLPPGVLNILTGLGSEAGAPLSSHPHVDKIAFTGSTVTGSKIMTAAAQLVKPVSLELGGKSPILVFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAEFLDKLVKWTKNIKISDPFEEGCRLGPVVSREQYEKILKLVSTAKSEGATILCGGGRPQHLKMGFYIEPTIISDVTTSMQIWREEVFGPVLCVKTFSSEDEAIELANDTQYGLAGAVISNDLERCERVSKALNAGIVWINCSQPCFCQAPWGGNKRSGFGRELGPRGLDNYLSVKQVTQYLSNEPWGWYQSPSKL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0759 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Vvi17g0759 503 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Vvi17g0759 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
Vvi17g0759 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Vvi17g0759 503 SUPERFAMILY ALDH-like 5 486 IPR016161 GO:0016491
Vvi17g0759 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 276 - -
Vvi17g0759 503 CDD ALDH_F10_BADH 27 487 - -
Vvi17g0759 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Vvi17g0759 503 PANTHER ALDEHYDE DEHYDROGENASE 3 502 - -
Vvi17g0759 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0759 Vvi-Chr17 8614528 8620581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0759 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 80.517 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0759 K00130 - vvi:100246770 1022.69