Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0757 ATGACATTATCTTCTTCTACGATTCAAGAATCCGCATCTCACCATCGCACTTACAGTAGAAAGCAAAAATCTCTGGGTCTCTTATGTTCTAATTTCTTGAGCTTGTACAATCGGGATGGGGTGGAACCGATTGGGCTCGATGATGCCGCAAGCCGACTAGGAGTTGAGAGGCGTCGGATCTATGACATTGTCAATGTTCTTGAAAGCGTTGGCGTTCTTGCAAGAAAAGCAAAAAATCAGTATTCTTGGAAAGGGTTTGGGGCAATTCCTAAGGCCCTAGAAGAACTTAGGGAAGAAGGTTTAAGGGAGAATTTCCATACCTTTGACAGCAACAACTCTGCAAAAGTAGATGACGAAGATGAAAGATTTTCCAATCCTAACACTGGGAGCCAGCAAGACAAATCAAACCCTAGTTCTAAACTGAATCTAAATGTTTTCTTCACAGACAACAGAAGAGAAAAATCACTGGGACTTCTTACACAGAATTTTGTGAAGCTATTTCTCTGCTCTAACGTGGATTTGATTTCCCTTGAAGAAGCTGCAAGGATATTGCTTGGGGATGGCCAGAACTCCTCAATAATGAGAACAAAAGTTAGACGGTTATATGATATTGCAAATGTGCTGTCTTCCATGAATCTCATTGAAAAGACTAATCAGACGGAAAACAGGAAGCCTGCATTCAGGTGGTTGGGGATGAGAGGAAAATCAGAGAATGGATCTTTAAGTGTTTTGAATCTTAATGAGTCTAAGAAAAGGACATTTGGTACTGAAATTACAAACATCAGCTTTAAAAGGAACAAGATGGCTTCTTCAGTTGAGGGGAATTCAAACCAGAATACAAAGATGCAATGGCAAATGCAAGTAAAGCATGAGAATTTGGAAAATGGGATTGAAAGAAGTGATTTTGAGAAGGGTCCAAAGCAAAGTTCAAAAAGTTACCAGTTTGGTCCTTTTGCTCCAGTTAGTGTTCAAGACACTGTGAGACAGGTTCGTGATTGGGAAAGTCTTGCATCTACATATCGTCCTCAGTACCACAGCCAAGCATTAAGAGACCTCTTTGCTCATTACATGGAAGCTTGGAAAACATGGTACTCTGAAGTAGCTGGGAAGGAGCCAATACAGATTTCTTGA 1131 0.4058 MTLSSSTIQESASHHRTYSRKQKSLGLLCSNFLSLYNRDGVEPIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYSWKGFGAIPKALEELREEGLRENFHTFDSNNSAKVDDEDERFSNPNTGSQQDKSNPSSKLNLNVFFTDNRREKSLGLLTQNFVKLFLCSNVDLISLEEAARILLGDGQNSSIMRTKVRRLYDIANVLSSMNLIEKTNQTENRKPAFRWLGMRGKSENGSLSVLNLNESKKRTFGTEITNISFKRNKMASSVEGNSNQNTKMQWQMQVKHENLENGIERSDFEKGPKQSSKSYQFGPFAPVSVQDTVRQVRDWESLASTYRPQYHSQALRDLFAHYMEAWKTWYSEVAGKEPIQIS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0757 376 MobiDBLite consensus disorder prediction 108 137 - -
Vvi17g0757 376 SMART E2F_TDP_2 20 85 IPR003316 GO:0005667|GO:0006355
Vvi17g0757 376 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Vvi17g0757 376 FunFam E2F transcription factor-like E2FE 146 233 - -
Vvi17g0757 376 Gene3D - 147 233 IPR036388 -
Vvi17g0757 376 Gene3D - 15 88 IPR036388 -
Vvi17g0757 376 PANTHER TRANSCRIPTION FACTOR E2F 10 345 IPR015633 GO:0000978|GO:0006357
Vvi17g0757 376 FunFam E2F transcription factor 8 15 87 - -
Vvi17g0757 376 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
Vvi17g0757 376 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Vvi17g0757 376 Pfam E2F/DP family winged-helix DNA-binding domain 21 85 IPR003316 GO:0005667|GO:0006355
Vvi17g0757 376 SUPERFAMILY "Winged helix" DNA-binding domain 19 83 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0757 Vvi-Chr17 8599804 8603212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0757 15 373 E2F-DP Transcription Factor Family AT3G48160 56.720 9.23e-135 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi17g0757 E2F_TDP 1.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0757 K09391 - vvi:100241701 697.197