Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0753 ATGTTCTCGTCAATCGCCCACAACTTGCATTACAAGTCACTTCCGCTCCATTCGGTTCCTCCACCACTGTATAAATATTGGAAGCAGATTCCCCGCACATTTCTGGTTATGGGTTCCGCCGCCGGCGAATTTCTTCGGCATGTGTTACCGGAGAAAGTTGGGGTTTCTGATCACTCCGCTGCTGGATCGGAGCTCCATGTTCTTGCTGTTGATGATAGCCATGTGGATCGGAAGGTGATTGAGAGGCTGCTCAAGATATCTTCTTGTAAAGTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGATGGTTTGAAGGTGAATCTGATCATGACGGACTATTCTATGCCTGGGATGACAGGGTATGAGTTGCTCAAGAAGATCAAGGAGTCAAAGGCTTTCAGAAAGATACCAGTGGTGATCATGTCTTCAGAAAACATCCTGACTCGCATTGACAGGTGTTTAGAGGAAGGTGCAGAGGAGTTTATAGTGAAACCAGTAAAACTGGCAGACGTGAGACGCCTGAGAGATTTCATAATGAGAGGAGAGGAAGAGGGAGAGGAAAATAGGAAGAAAGGGAACCATAAGAGAAAGCTACAAGATGATTACAGCATCTCACCCCCATTGTCACCAGCACCATCACTTGATTGTGAGATATCCTCGTTGCTACTACCATCTTCTTCTTCTTCTTCTCCAGAGTGTCCTTCAAAGCGACCTAGATTGTGGGTTGAAGATTAA 777 0.4698 MFSSIAHNLHYKSLPLHSVPPPLYKYWKQIPRTFLVMGSAAGEFLRHVLPEKVGVSDHSAAGSELHVLAVDDSHVDRKVIERLLKISSCKVTAVESGTRALQFLGLDGEENSVGFDGLKVNLIMTDYSMPGMTGYELLKKIKESKAFRKIPVVIMSSENILTRIDRCLEEGAEEFIVKPVKLADVRRLRDFIMRGEEEGEENRKKGNHKRKLQDDYSISPPLSPAPSLDCEISSLLLPSSSSSSPECPSKRPRLWVED* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0753 258 MobiDBLite consensus disorder prediction 197 215 - -
Vvi17g0753 258 PANTHER TWO-COMPONENT RESPONSE REGULATOR 65 208 IPR045279 GO:0009736
Vvi17g0753 258 Pfam Response regulator receiver domain 67 186 IPR001789 GO:0000160
Vvi17g0753 258 SMART REC_2 65 189 IPR001789 GO:0000160
Vvi17g0753 258 SUPERFAMILY CheY-like 63 193 IPR011006 -
Vvi17g0753 258 MobiDBLite consensus disorder prediction 197 258 - -
Vvi17g0753 258 ProSiteProfiles Response regulatory domain profile. 66 193 IPR001789 GO:0000160
Vvi17g0753 258 MobiDBLite consensus disorder prediction 233 248 - -
Vvi17g0753 258 Gene3D - 65 233 - -
Vvi17g0753 258 CDD REC_typeA_ARR 67 188 - -
Vvi17g0753 258 FunFam Response regulator 3 65 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0753 Vvi-Chr17 8563598 8565909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0753 42 217 Response Regulator Gene Family AT3G48100 68.132 2.56e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi17g0753 Response_reg 4.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0753 K14492 - vvi:100258759 485.337