LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi17g0752	ATGAATGGTAGGAAAGCCCTGGGAGAGTTGGACAACCCCAACCAGCCACAACCACCTTCATTGAAACGTTCAGCAACCAAAATTCAAAACACAGAGGGCAGAAGAATTTTACTTCCATTGCAGCCAAAACCAACCAATTTCTTCTACTCTCTCTGTGATTCTATCTTTTCAGAGTTCATGGGTGTGAAGGGTCATCCATGGATTCTTCCCTCTCTCTTGTGTTTCTCTCTTCTTTGTCTCCCTTGTTTCTCTCAACCAAGTTCTTCACCTGCAAGTTCCATCCCCAGTTCTCCTAATAATTCTCCAATCTCTCCACAAATTCCAGGAGCAGCATCACATGGAAAAGTTGGTGAGGTAGCTGGAGCAACAGCTGCAAGTGCTGTTGTTGTTGCTGGGGTGTTCTTCTGCTTCAGAAAATTTGTTGCTCGTCAACGTCAGAGAGATAAAAATGAATCGAGTTTTCGTCGTGAAGAAGCTGAGGTGATGCATGAGGAATTCAAGCATCGTGGAACTCTGAAAGGATTGATTGTTGATGATAATGGAGTGGAGGTTCTCTATCTGAGGAAACTTGAAGGTGGGCAATTGAGGAATAGTTTCTCTAAGGTTTTGAATAATCCTAATGAAGAAGAAAGAGGAAAGATAGTGGAGAGTATGGTAGATAGACCCAGAAAATCAAAGAGAATTCAAGAGATCCCATTTCTTCATGAGTCATCAGATGTGATTATCCTAGAGAAAGAGGCCAAACCAGTTTTGAAAGTTCCAACTCTACAGCCTCAGGTTTCTGTACCATCTCCTCCTCCACCTCCACCACCAGTACCCTCTCAGCCACTTCCACCGCCTCCACAGGTGATTCCAATAAAGAAAACTCCCAACCCACATTCTCCACCACTCCCTCCTAACAAGAAAATCCCCGGACCGCCTCCTCCTCCACCACCTCCTCCTGAAAGGAAAATCCCTGGACCACCTCCTCTGCCACCAATCCCAACAAGGAGGAAGCCTGCAGCACCACCTCCACCACCTAAGGCAGGTGGTTTGGTTTCAGCTTTGAAACCTCCACCTGTACCAAGGGGGAAGATGAACAGTAATAACAGGGCAGAGGCATCAACTGAAGGAAGCTCCAAGGGAACTGATTTTGGGCAGATGAAGCTGAAGCCATTGCACTGGGATAAGGTCATAGCTAATGTTGATCATTCAATTGTGTGGGATGAGATCAATGATGGATCCTTCAGGTTTGATGATGAACTTATGGAATCTCTGTTTGGATACACTGCGAACCAGAAACCCCCTGAAATGAATAACAAGCCAGTGACTTCAAGCAGTTCCAACTCTGCCCTGCCAACCCAAATTTTCATCCTGGAACCCCGAAAATCACAAAATACTGCAATTGTACTTAGATCTCTTGCAGTCTCTCGTAGAGAAATTCTAGATGCCCTCCTGGAAGGTCAAGGCCTCACCACTGATACTCTTGAAAAACTGACCAAAATTTCTCCAACTCAAGAAGAAGAATCCAAAATCCTGCAATTCAATGGCAATCCAACTAAGCTTGCTGATGCAGAGTCCTTTCTCTACCACATCCTGAAAGTTGTTCCTTCAGCGTTCATGCGCTTCAATGCAATGCTTTTCAGAACAAACTACGACCCTGAAATCCTTCACTTGAAGGAGTCTTTGCAAACACTTGAATTGGCCTGCAAGGAGCTAAGAAGTCGTGGGCTTTTCTTAAAACTTCTTGAAGCCATTCTCAAGGCTGGCAATAGAATGAATGCAGGAACCGCCAGAGGAAATGCCCAAGGCTTCAACCTTAGTGCTCTTCGTAGACTTTCAGATGTGAAGAGCATTGATGGAAAGACTACTTTACTTCACTTTGTAGTGGAACAAGTAGTTCGATCAGAGGGTAGGCGTTGTGCAATCAATCAGAACGATAGCCTGGACAGAAGTAATAGTCAAAGAGGCAAAAACAGTGATCCAAATTCAGTAAGTCAGACACCAAAAGAAGAGAAAGAGAAAGAGAAAGAGAATGAGAAAGAGAAAGAGAACAAAAAAGAGAAAGAGTACCTTATGCTTGGATTACCAGTGTTAGGGGGGCTAAGTACTGAATTCTATAATGTAAAGAAAGCTGCAGTCATAGACCATGATACTTTCATCAACATGTGCTCAACTCTCACAGCCCGTGTTGCTGAAATTCAGCTGCTTGTGGCAAGCTGCAGCAATGGCGAGAAGGGCAGGTTTGTGCAGGAAATGAAAGGGTTTCTAGAGGAATGTGAGGAGGAGCTTAAAGTGGTAAGAGTAGAGCAAACAAGGGTAATGGAGCTTGTGAAGAGAACAACAGAATATTACCAAGCGGGAGCTTCTAAAGACAAAGGGGGACAACCTCTTCAGTTGTTTCTCATTGTGAAGGATTTTCTTGACATGGTTGATCAAGCTTGCCAAGACATTTACAGGAGACTGCAGAAGAAGAATGTGACAAAGACTGTAGGATCATCCCCACCACTGTCACCAACAAGGCAGGCAGTGAGATTCACAAACTTGCAGTTACAATTCATGTCAGATATGTGTAGGACAACATCTTCCAGCGATTCAGAGGATGACTTCTGA	2592	0.4429	MNGRKALGELDNPNQPQPPSLKRSATKIQNTEGRRILLPLQPKPTNFFYSLCDSIFSEFMGVKGHPWILPSLLCFSLLCLPCFSQPSSSPASSIPSSPNNSPISPQIPGAASHGKVGEVAGATAASAVVVAGVFFCFRKFVARQRQRDKNESSFRREEAEVMHEEFKHRGTLKGLIVDDNGVEVLYLRKLEGGQLRNSFSKVLNNPNEEERGKIVESMVDRPRKSKRIQEIPFLHESSDVIILEKEAKPVLKVPTLQPQVSVPSPPPPPPPVPSQPLPPPPQVIPIKKTPNPHSPPLPPNKKIPGPPPPPPPPPERKIPGPPPLPPIPTRRKPAAPPPPPKAGGLVSALKPPPVPRGKMNSNNRAEASTEGSSKGTDFGQMKLKPLHWDKVIANVDHSIVWDEINDGSFRFDDELMESLFGYTANQKPPEMNNKPVTSSSSNSALPTQIFILEPRKSQNTAIVLRSLAVSRREILDALLEGQGLTTDTLEKLTKISPTQEEESKILQFNGNPTKLADAESFLYHILKVVPSAFMRFNAMLFRTNYDPEILHLKESLQTLELACKELRSRGLFLKLLEAILKAGNRMNAGTARGNAQGFNLSALRRLSDVKSIDGKTTLLHFVVEQVVRSEGRRCAINQNDSLDRSNSQRGKNSDPNSVSQTPKEEKEKEKENEKEKENKKEKEYLMLGLPVLGGLSTEFYNVKKAAVIDHDTFINMCSTLTARVAEIQLLVASCSNGEKGRFVQEMKGFLEECEEELKVVRVEQTRVMELVKRTTEYYQAGASKDKGGQPLQLFLIVKDFLDMVDQACQDIYRRLQKKNVTKTVGSSPPLSPTRQAVRFTNLQLQFMSDMCRTTSSSDSEDDF*	864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi17g0752	863	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	373	830	IPR015425	-
	Vvi17g0752	863	Coils	Coil	663	685	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	90	107	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	90	112	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	361	376	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	637	659	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	660	679	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	258	378	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	637	679	-	-
	Vvi17g0752	863	Coils	Coil	549	569	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vvi17g0752	863	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	386	818	-	-
	Vvi17g0752	863	MobiDBLite	consensus disorder prediction	259	346	-	-
	Vvi17g0752	863	PANTHER	FORMIN-RELATED	82	820	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vvi17g0752	863	SMART	it6_source	373	819	IPR015425	-
	Vvi17g0752	863	Pfam	Formin Homology 2 Domain	380	804	IPR015425	-
	Vvi17g0752	863	Gene3D	Formin, FH2 domain	396	823	IPR042201	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi17g0752	Vvi-Chr17	8559043	8561734	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi17g0752	123	861	FH2 protein (formin) Gene Family	AT1G70140	45.801	0.0	564

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi17g0752	-		-	vvi:100255242	1005.36