Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0749 ATGGCCGATCCCTATCAACCATCGCCGTCTTCTCATGTTTCAAGGGCTAGACCGGAAGGGAAGCGAACGATAGAACAGGGAGTGGAGTATCTCAAGTTTGTGAGGGATACATTTGGGTCTCGCAACGATAGCCGATACCGTGGTTTTTTGCGAGTCATGAAAGATTACAAGGGAGGAATATTTGATACCCTGGAAGTTATATCATTGGTGAAGGAGATGTTTGAGGGCCACCATGAACTCTTGACGGGTTTCAACATCTTGTTGCCAAGAGGATACAGTATTAATTCTGTTGCACCTACAAAAGACCCACCAACAGCATTGGAAGCTCGTGTGGAGGCCGTCAACTTAGTAAACAAAATCAGGACCCGGTTGCAGGATGACAAGCTTTACAGATCCCTCGTTGATGTTATGTGCAAATATGGAAGGAATCCCCGTGTTAACATTCTTCTCAAAGAGCTACCCATCCTTTTTCAAGACCATCCAGATTTACTCGCGGAATTATATATCCGCTACCCAGAGACAAAAGGACAAGTCCCAGAGAGATGTACAGAAGGTTCAGAAACATGA 567 0.4515 MADPYQPSPSSHVSRARPEGKRTIEQGVEYLKFVRDTFGSRNDSRYRGFLRVMKDYKGGIFDTLEVISLVKEMFEGHHELLTGFNILLPRGYSINSVAPTKDPPTALEARVEAVNLVNKIRTRLQDDKLYRSLVDVMCKYGRNPRVNILLKELPILFQDHPDLLAELYIRYPETKGQVPERCTEGSET* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0749 188 ProSiteProfiles PAH domain profile. 103 174 IPR003822 GO:0006355
Vvi17g0749 188 PANTHER SIN3B-RELATED 22 169 IPR039774 GO:0003714
Vvi17g0749 188 ProSiteProfiles PAH domain profile. 17 91 IPR003822 GO:0006355
Vvi17g0749 188 Gene3D Paired amphipathic helix 27 89 IPR036600 GO:0006355
Vvi17g0749 188 Pfam Paired amphipathic helix repeat 45 85 IPR003822 GO:0006355
Vvi17g0749 188 SUPERFAMILY PAH2 domain 19 90 IPR036600 GO:0006355
Vvi17g0749 188 Gene3D Paired amphipathic helix 108 168 IPR036600 GO:0006355
Vvi17g0749 188 SUPERFAMILY PAH2 domain 112 167 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0749 Vvi-Chr17 8528944 8536945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0749 20 113 WRKY Transcription Factor Family AT4G12020 37.234 4.67e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi17g0749 PAH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0749 K11644 - vvi:100250081 374.4