Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0747 ATGATTCCATCTACACCTCATAAGAAAACCCTTCACTCAATCCTCGCCTCCAAGCTCAAGCTCACAATCCCATCTCCTTCTTCTCCTGATTCCCTGGATTTCTCCGATGTTTTCGGCCCCCTGACCCCCCACCACCACAAAGCCTCACCCTCTTCTTCATCCCCTTCATCCTCATCACCATGTGTCGCTCTTGGTGACCCACAAGTTATTCACAACAGATCTCACTCCTTACTGGGTCCCTCGCCTCGCTTTGCAGTGACCGCCCCTCTTCTTCCGTTCAAGGAAGATATGGTTTTTCAGAGCGAGGGAAGTGATAAGGAGGGTGGGGATGAAGTGGGTGAGGGAAGGGTGGGGCCTGGGGACTTTGAGATTATGAGGGTCGTTGGGAAAGGTGCTTTTGGGAAGGTTTTTCAGGTCAGGAAGAAGGGTGGACCTGAAATCTCTGGCGATAGTGATGGCATTTTTGCTATGAAAGTGATGAGGAAGGACACTATCATAAGCAAGAATCACATGGATTATATGAAGGCTGAGAGGGATATTCTCATCAAAGTGGAGCATCCATTTATCGTCAGCCTTAGGTGCTCTTTTCAGACAAACTCTAAACTCTATTTGATCATGGATTTTGTAAATGGAGGGCACCTCTTCTTTCATCTATACAGACAGGGCATCTTCAGCGAGGATCAGGCAAGGGTTTATATTGCTGAGATAGTATCTGCTGTTTCCCATCTTCACAAGAGCGGCATCGTACATCGGGATCTTAAACCTGAAAATATTCTCATGGACGCTGATGGGCATGTTATGCTAACTGATTTTGGACTGGCAAAAGAAATTGATGAGTCAAGCAGATCTAATTCAATGTGTGGAACCACAGAATACATGGCTCCAGAAATCTTACTTTCTAAGGGGCACAATAAAGATGCGGATTGGTGGAGTATTGGGATACTCTTGTATGAAATGTTAACTGGGCAGCCTCCATTCACACATGCAAATAGACAAAAGCTTCAGCAGAGAATTATCAAAGAGAAGGTGAAGCTTCCTTCATACCTAAGCAGTGAAGCTCACTCTTTGCTCAAAGGATTGCTGCAAAAGGAACCATCAAGAAGGCTAGGCAGTGGTCCTACTGGAGGAGATGAGATTCAAAATCATAAATGGTTTCGGTCAATCAACTGGAAGAAATTGGAGGCCAGAGAATTGCAGCCAAAGTTCAAGCCAGATGTGAGTGGAAAAGACTGCACAGCCAATTTCGACCAATGCTGGACAGCAATGCCTCTGGATGACTCCCCAGCTCCCACACCAACAGCAGGTGGGCATTTCCAAGGGTATACTTATGTTGCACCTAACCCTTGGCTTTCATCTTGA 1359 0.4606 MIPSTPHKKTLHSILASKLKLTIPSPSSPDSLDFSDVFGPLTPHHHKASPSSSSPSSSSPCVALGDPQVIHNRSHSLLGPSPRFAVTAPLLPFKEDMVFQSEGSDKEGGDEVGEGRVGPGDFEIMRVVGKGAFGKVFQVRKKGGPEISGDSDGIFAMKVMRKDTIISKNHMDYMKAERDILIKVEHPFIVSLRCSFQTNSKLYLIMDFVNGGHLFFHLYRQGIFSEDQARVYIAEIVSAVSHLHKSGIVHRDLKPENILMDADGHVMLTDFGLAKEIDESSRSNSMCGTTEYMAPEILLSKGHNKDADWWSIGILLYEMLTGQPPFTHANRQKLQQRIIKEKVKLPSYLSSEAHSLLKGLLQKEPSRRLGSGPTGGDEIQNHKWFRSINWKKLEARELQPKFKPDVSGKDCTANFDQCWTAMPLDDSPAPTPTAGGHFQGYTYVAPNPWLSS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0747 452 Gene3D Phosphorylase Kinase; domain 1 121 427 - -
Vvi17g0747 452 MobiDBLite consensus disorder prediction 46 63 - -
Vvi17g0747 452 Gene3D Transferase(Phosphotransferase) domain 1 209 404 - -
Vvi17g0747 452 Pfam Protein kinase domain 122 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0747 452 ProSiteProfiles Protein kinase domain profile. 122 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0747 452 FunFam Non-specific serine/threonine protein kinase 120 232 - -
Vvi17g0747 452 ProSitePatterns Protein kinases ATP-binding region signature. 128 158 IPR017441 GO:0005524
Vvi17g0747 452 FunFam Non-specific serine/threonine protein kinase 209 404 - -
Vvi17g0747 452 ProSiteProfiles AGC-kinase C-terminal domain profile. 386 452 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi17g0747 452 Pfam Protein kinase C terminal domain 406 443 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vvi17g0747 452 SUPERFAMILY Protein kinase-like (PK-like) 120 443 IPR011009 -
Vvi17g0747 452 MobiDBLite consensus disorder prediction 43 66 - -
Vvi17g0747 452 PANTHER RIBOSOMAL PROTEIN S6 KINASE 76 447 - -
Vvi17g0747 452 SMART pkinase_C_6 386 445 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi17g0747 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vvi17g0747 452 SMART serkin_6 122 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0747 Vvi-Chr17 8459349 8463853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0747 19 446 AGC Kinase Gene Family AT3G08720 58.553 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vvi17g0747 Pkinase 2.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0747 K04688 - vvi:100244943 883.248