Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0746 ATGCGGCCGCTCTGCTTCTTTTTTCTTCGGAGTCTCCGACGTTGCTCCGGCGAGATGTCTCGCTGCTGTTCTCAGTGTGGTCATAATGGTCATAATTCTCGCACATGTGCGGAGTCCGGTGGCGGTGGCGGTGGTGGTGATGGTGGTTCCGAAGGGATCATGCTGTTTGGAGTGAGAGTCACTGTGGATTCGATGCGTAAGAGCGTCAGTTTGAACAATCTGTCGCAGTATGAGCAGCCTCACGAGTCTTCCAACGCCGATGCCACCCCCGCCGCTGGATACGTTTCCGCCGACGATGTGGCTCACCACTCCTCAGGGAATCGCGAGCGCAAGCGAGGTGTCCCATGGACAGAAGAAGAACACAAGCTTTTCCTGGTTGGATTGCAGAAAGTTGGAAAAGGAGACTGGCGAGGAATCTCCAGGAATTTCGTGAAAACTCGAACTCCAACACAGGTCGCAAGTCATGCTCAGAAGTACTTTCTCCGCAGAAACAATCTCAATCGACGACGCCGCAGATCTAGCCTCTTCGACATCACCACCGAATCGGTCACGGCAGTTCCCATGGAAGAAGAGCAAGTACTTCATCATCAAGAGAACACATCTCAATCGCAGCAGTCTCCTAAGACTTTTTCCGAGACCGGCAGTGGCGGTGGATTTCCGGTTGTGCCAGCTTTTCCAATGCCGATAAATCCGGTGGTTGTACCAGTTCCGATTCAGAATCCAATGGAAAACCTAACTCTAGGACAAAATGATGTTAATACAAGGCTGGTCCGTCCGATTCCCGTTCTTCCTATTCCTCCCGAGTCAACGGATCTCAACTTGAATCTGAAGTCCTCAGTTGATCCATCCCCCTTGTCACTGAAGCTCTCCCTCTCATCCAATCAGAATCATCCAAATCAACCATCTAGGCACTCCGCTTTTCAGGCTATGTCAAGCTTCAACAACGGTGATAGCATCATAAGCGTTGCTTGA 972 0.5113 MRPLCFFFLRSLRRCSGEMSRCCSQCGHNGHNSRTCAESGGGGGGGDGGSEGIMLFGVRVTVDSMRKSVSLNNLSQYEQPHESSNADATPAAGYVSADDVAHHSSGNRERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNLNRRRRRSSLFDITTESVTAVPMEEEQVLHHQENTSQSQQSPKTFSETGSGGGFPVVPAFPMPINPVVVPVPIQNPMENLTLGQNDVNTRLVRPIPVLPIPPESTDLNLNLKSSVDPSPLSLKLSLSSNQNHPNQPSRHSAFQAMSSFNNGDSIISVA* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0746 323 Pfam Myb-like DNA-binding domain 115 160 IPR001005 -
Vvi17g0746 323 ProSiteProfiles SANT domain profile. 111 164 IPR017884 -
Vvi17g0746 323 PANTHER TRANSCRIPTION FACTOR KUA1 19 276 - -
Vvi17g0746 323 MobiDBLite consensus disorder prediction 197 213 - -
Vvi17g0746 323 FunFam transcription factor MYB1R1 114 165 - -
Vvi17g0746 323 SMART sant 112 162 IPR001005 -
Vvi17g0746 323 CDD SANT 115 160 IPR001005 -
Vvi17g0746 323 MobiDBLite consensus disorder prediction 193 217 - -
Vvi17g0746 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Vvi17g0746 323 SUPERFAMILY Homeodomain-like 110 165 IPR009057 -
Vvi17g0746 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 162 IPR006447 GO:0003677
Vvi17g0746 323 Gene3D - 114 166 - -
Vvi17g0746 323 ProSiteProfiles Zinc finger CCHC-type profile. 23 38 IPR001878 GO:0003676|GO:0008270
Vvi17g0746 323 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0746 Vvi-Chr17 8454415 8455906 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi17g0746 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0746 - - vvi:100265707 581.637