Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0740 ATGGCGAAATCCATTACCCCAAATGGCATTTCCACTATTCTCTCAAACCCATCTCCGGATTCTTCCACAGAACTCCCAGAAATCATCGTTCAAGTCATAGATCTCACGCCAATCGGAAACAGATATAAATTTACAGCAAATGACGGAAAGATGAAGCTCAAAGCAATGTTTCCATCCAGTTTTTCATCTGAGATAAACTCTGGAAATATTCAAAACCTTGGTCTCATTCAAGTTATTGATTACACCCTCAATGACATTCCGAGCAAGCAAGAGAAATATTTGATTGTGACAAAATGTGAGGCTGTCTCTCCTGCACTTGAAGTGGAATTCAAGACTGAGGTGAAAAGTGAAGAAACTGGAATCCTGTTAAGGCCAAAACAAGTAGTTGAGATTCAGAGGGAGGTGAAAACGGAAGGAACTGGCATATTTTTGAAGCCAAAGCAAGAAATAGTTGCTAAATCAGCTGCTCAGATAGTAAATGAACAGCATGGAAATATGGCTCCTGCTGCACGAATGGCCATGACAAGAAGGGTTCATCCTCTTGTTTCCTTGAATCCTTACCAAGGCAACTGGACGATAAAAGTCCGGCTTACAAACAAAGGAACCATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTAGAGTTAACAGATGAGGATGGTACACAAATCCAAGCAACAATGTTTAACGAAGCTGCAAGGAAGTTCTATGAAAAGTTCCAACTGGGGAAGGTCTATTACATATCAAAAGGAGCTCTAAAAGTAGCCAACAAGCAGTTTAAAACTGTACAAAATGATTATGAAATGACCCTGAATGAAAATTCAGAGGTTGAGGAGGCCAGTAATGAAGAAACTTTTATCCCTGAAGCAAAATTCAAATTTGTTGAGATTGAAGAGTTGGGTCCTTATGTCAATGGGAAGGAGCTTGTAGATGTTATTGGAGTTGTTCAAAGTGTCTCTCCTACAATGAGCATACGAAGGAAGAGTAACAATGACATTGTTCCTAAGCGTGATATAACTATTGCGGACAAGACGAAGAAGACTGTTGTGGTCTCTTTGTGGAATGATCATGCTACTAATGTAGGGCAGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTTAAAGTTGGAGACTTCCAAGGTGTATCACTATCAACATTGAGTAAGAGTATTGTACTGGTAAATCCAGATACACCTGAATCAAAAAAGTTGAGATCCTGGTATGATTCTGAAGGTAAAGGAGCTTCAATGGCTTCTATTGGGTCTGATATCAGTCCTTCATCTAAGGGTGGAGTCAAGTCCATGTACTATGACAGGGTTTCCCTTTCTCATGTAACCAGCAACCCATCTTTGGGTGAAGACAAGCCTTCCTTTTTTAGCATCAGGGCATACATAAGCTTCATCAAGCCTGATCAAACAATGTGGTACCGGGCTTGTAAGACATGCAACAAGAAAGTCACAGATGCTATTGGATCTGGGTATTGGTGTGAAGGATGCCAAAAGAATGATGATGAGTGCAGTTTAAGGTACATAATGGTAGTGAAAGTTTCAGATGCTAGTGGTGAAGCTTGGCTTTCTCTGTTCAATGAACAAGCAGAGAGAATGTTTGGGTGCTCTGCTGATGAGCTTGATAAGCTGAAATCACAGGAGGGAGAAGAGAACCTATTCCAACAGAAATTGAAGGAAGCTATTTGGGTCCCTCATCTTTTCCGGATTAGTGTTGCACAGCATGAGTACATGAATGAGAAAAGGCAGAGGATAACAGCCAGGGCTGTTGTTCCAGTTGATTTTGCAGCTGAATCCAGATTATTGTTGGAGGAGATATCAAAGATGAAGACTTCACAATAG 1878 0.4036 MAKSITPNGISTILSNPSPDSSTELPEIIVQVIDLTPIGNRYKFTANDGKMKLKAMFPSSFSSEINSGNIQNLGLIQVIDYTLNDIPSKQEKYLIVTKCEAVSPALEVEFKTEVKSEETGILLRPKQVVEIQREVKTEGTGIFLKPKQEIVAKSAAQIVNEQHGNMAPAARMAMTRRVHPLVSLNPYQGNWTIKVRLTNKGTMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFQLGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEASNEETFIPEAKFKFVEIEELGPYVNGKELVDVIGVVQSVSPTMSIRRKSNNDIVPKRDITIADKTKKTVVVSLWNDHATNVGQELLDNADKFPIVAIKSLKVGDFQGVSLSTLSKSIVLVNPDTPESKKLRSWYDSEGKGASMASIGSDISPSSKGGVKSMYYDRVSLSHVTSNPSLGEDKPSFFSIRAYISFIKPDQTMWYRACKTCNKKVTDAIGSGYWCEGCQKNDDECSLRYIMVVKVSDASGEAWLSLFNEQAERMFGCSADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAAESRLLLEEISKMKTSQ* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0740 625 CDD RPA1_DBD_A 180 283 - -
Vvi17g0740 625 NCBIfam replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi17g0740 625 Pfam Replication factor-A C terminal domain 468 614 IPR013955 -
Vvi17g0740 625 CDD RPA1_DBD_B 313 419 - -
Vvi17g0740 625 MobiDBLite consensus disorder prediction 1 22 - -
Vvi17g0740 625 FunFam Replication protein A subunit 434 621 - -
Vvi17g0740 625 Gene3D - 432 621 IPR012340 -
Vvi17g0740 625 FunFam Replication protein A subunit 4 114 - -
Vvi17g0740 625 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Vvi17g0740 625 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Vvi17g0740 625 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Vvi17g0740 625 Gene3D - 177 286 IPR012340 -
Vvi17g0740 625 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vvi17g0740 625 SUPERFAMILY Nucleic acid-binding proteins 446 621 IPR012340 -
Vvi17g0740 625 CDD RPA1_DBD_C 456 620 IPR047192 -
Vvi17g0740 625 PANTHER REPLICATION FACTOR A 1, RFA1 191 585 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vvi17g0740 625 FunFam Replication protein A subunit 177 286 - -
Vvi17g0740 625 SUPERFAMILY Nucleic acid-binding proteins 178 289 IPR012340 -
Vvi17g0740 625 Gene3D - 4 112 IPR012340 -
Vvi17g0740 625 FunFam Replication protein A subunit 290 429 - -
Vvi17g0740 625 Gene3D - 291 431 IPR012340 -
Vvi17g0740 625 Pfam Replication protein A OB domain 309 405 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0740 Vvi-Chr17 8383132 8387549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0740 1 625 Core DNA Replication Machinery Family AT5G08020 70.767 0.0 946
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0740 K07466 - vvi:100255412 1221.07