Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0729 ATGGCTTTCTTTGGTAAAGTTGGGAACATACTTCGACAGACTGTAAGCAAGCAGGTCAACTCTCAGTTTTCTGTTTCCAACCCATCCATCTACCAAGCAATAAGATGCATGTCATCCTCGAAACTCTTCATTGGAGGTCTCTCATATAGCACAGATGACACAAGTTTAAGAGAAGCTTTCCATAAGTATGGGGAAGTCATTGAAGCAAGAGTCATTGTGGATCGTGAGACTGGTAGATCCAGAGGATTTGGATTTGTTACTTTCACTTCTAGTGAGGAGGCCTCCAGTGCCATCCAGGCCTTGGATGGACAGGATCTTCATGGCCGTAGGGTGAGAGTGAACTATGCAACGGATAGAGCACGTTCTGGTGGCTTTGGAGGTGGTGGTGGTTATGGAGGTGGCGGTGGTGGCTATGGAGGGGGTGGTTATGGAGGTGGCGGCTATGGTGGAAGTGGCGGCTATGGAGGTGGTGGCTATGGTGGTGGTAGTGGTGGATATGGTGGTGGTGGTGATAGCTATGGGAGTGGAGGTGGAAACTATGGCAGTGGTGGTGGTGGTTATGGTGGGAGTAGCGGTGGCTATGGCAGTGGCGGGAATTTCAGTGTTGCTGGTGGTAGTGACAATTATGTTGGTGGTGCTGCTGGAAGCAGTAGCGGCTTTCCTAGTGGTGGTGGCAGCAGCTTTGCCAGTGGTGGGGCTGATCAGTTGGGTACCAATGAGAGCAGCAGCGTGGGTGATGGTGCTGGGGAGTTTTCTCCAGATGAACCTGCCACAGAAGGAAATTACAGGGATGACGATGATGAACCTGATGACTATGCCAACAGAAGGGCTTGA 834 0.5096 MAFFGKVGNILRQTVSKQVNSQFSVSNPSIYQAIRCMSSSKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYATDRARSGGFGGGGGYGGGGGGYGGGGYGGGGYGGSGGYGGGGYGGGSGGYGGGGDSYGSGGGNYGSGGGGYGGSSGGYGSGGNFSVAGGSDNYVGGAAGSSSGFPSGGGSSFASGGADQLGTNESSSVGDGAGEFSPDEPATEGNYRDDDDEPDDYANRRA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0729 277 PRINTS Eggshell protein signature 181 199 - -
Vvi17g0729 277 PRINTS Eggshell protein signature 36 52 - -
Vvi17g0729 277 PRINTS Eggshell protein signature 126 141 - -
Vvi17g0729 277 PRINTS Eggshell protein signature 154 164 - -
Vvi17g0729 277 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 199 - -
Vvi17g0729 277 Gene3D - 10 138 IPR012677 -
Vvi17g0729 277 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 138 - -
Vvi17g0729 277 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vvi17g0729 277 MobiDBLite consensus disorder prediction 206 277 - -
Vvi17g0729 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vvi17g0729 277 MobiDBLite consensus disorder prediction 211 246 - -
Vvi17g0729 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vvi17g0729 277 CDD RRM2_NsCP33_like 41 116 - -
Vvi17g0729 277 SUPERFAMILY RNA-binding domain, RBD 23 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0729 Vvi-Chr17 8196311 8199083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0729 38 147 Eukaryotic Initiation Factors Gene Family AT4G34110 29.688 3.23e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0729 K12741 - vvi:100256940 237.654