Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0726 ATGGCGATGGCTGCCTTTAGACGAGAAGGGAGGCGTTTCGCCCCTCTAATCACCCCCCGTCCTATCGCCGCCGTCCGATCCTCTCCCATTCCTGAGGAGCAGGCCCCTCTTGGAGTTCGCTCTATTTCAACTCAAATAGTCAGAAACCGGATGAAGAGTGTCAAGAACATCCAGAAAATTACAAAGGCAATGAAAATGGTTGCAGCTTCAAAGCTACGAGCAATTCAAACTAGAGCTGAAAATTCCCGTGGCCTATGGCAGCCATTTACCGTACTGCTTGGCGATTCTCCTAGTGTTGATGTAAAGAAGAATGTTATTGTTACTATTTCTTCAGACAAAGGTCTATGTGGTGGAATTAATTCTACATCAGTCAAGATTAGCAAGGCTCTTCATAAGTTTACTTCTGGGCCTGAGAAGGGAACAAAGTATGTTGTTTTGGGAGAAAAGGCAAAGGCTCAGCTGATGCGTGATTCAAAGAAGGACATTGAGCTATGCATAACTGAATTGCAGAAAAATCCTCTGAATTATACACAGGTTTCTGTTCTTGCTGATGAAATCTTAAAGAATGTGGAGTATGATGCTTTGAGAATTGTTTTCAACAAGTTCCGTTCAATTATCTCATTTGTACCAACAACGTCAACAGTGTTATCTCCTGAGGTTGTGGAGAGAGAGGCTGAGGCTGGGGGAAAACTGGGTGATCTGGACTCCTACGAAATTGAAGGTGGTGAGACGAAGGGAGAAATACTTCAGAACCTAGCGGAGTTCCAGTTTTCTTGTGTTTTGTTCAATGCTGTATTAGAGAATGCTTGCAGTGAGCAAGGTGCGAGGATGTCTGCCATGGATAGCTCCAGCAGAAATGCTGGCGATATGCTTGATCGTCTCACGCTTACTTACAACAGAACCCGTCAAGCTGCAATCACCACAGAACTGACTGAGATTATATCTGGAGCATCAGCACTGGAGGGCTAA 969 0.4469 MAMAAFRREGRRFAPLITPRPIAAVRSSPIPEEQAPLGVRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTVLLGDSPSVDVKKNVIVTISSDKGLCGGINSTSVKISKALHKFTSGPEKGTKYVVLGEKAKAQLMRDSKKDIELCITELQKNPLNYTQVSVLADEILKNVEYDALRIVFNKFRSIISFVPTTSTVLSPEVVEREAEAGGKLGDLDSYEIEGGETKGEILQNLAEFQFSCVLFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQAAITTELTEIISGASALEG* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0726 322 Gene3D - 67 279 - -
Vvi17g0726 322 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 45 320 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 317 - -
Vvi17g0726 322 PANTHER ATP SYNTHASE GAMMA CHAIN 38 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 NCBIfam ATP synthase F1 subunit gamma 43 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 FunFam ATP synthase gamma chain 275 317 - -
Vvi17g0726 322 ProSitePatterns ATP synthase gamma subunit signature. 306 319 IPR023632 -
Vvi17g0726 322 PIRSF ATP_synthase_gamma 10 320 - -
Vvi17g0726 322 CDD F1-ATPase_gamma 43 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 PRINTS ATP synthase gamma subunit signature 298 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 PRINTS ATP synthase gamma subunit signature 193 210 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 PRINTS ATP synthase gamma subunit signature 267 286 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 PRINTS ATP synthase gamma subunit signature 101 120 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vvi17g0726 322 FunFam ATP synthase subunit gamma 67 279 - -
Vvi17g0726 322 Pfam ATP synthase 45 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0726 Vvi-Chr17 8166279 8173771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0726 12 320 Primary Pumps ATPases AT1G15700 30.387 1.54e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0726 K02136 - vvi:100246670 617.846