Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0711 ATGGGTCGTGGCAAGTTAAAAATGGAGTTGATCGCTAATGAGAAACTTCGGTGCAGAACTTTCCGAAATAGGCAAAAGGGCTTGAAGAAAAAGCTCCAGGAGTTGTCAACTCTATGTGATGTTGAAGCGTGTATGATCATGTATTGTGATCAGAATGGCAATGGCTCCTATTCTTCTCAGCCTGATGTTTGGCCTGAAAATCACTATGAAGTTCAACGTATAGTGAACAAGTACGTGAAGGCAGACCATGGAAAGAGGGCGGTGGATTTATCTGACATTCTTGAAAGCAGAAAGAGGAAGGCCGAAGTTGAGCTGCAAAAGCTGCAGGAAAAAAATGGCGAAACCAAAGGGCAGACTTCTGAGACTGGATTGGAACTGGATGGGCTTTCCTATGAAAATCTGATGGAAATAAATGATCAATTGGACAGGAAACTTGAACATGTGATGAGTCTGATTGATTTGAAGAAGGGAGAAGCGGGCTTGATGAGTAAGACTCCTGTGAACTCCTCTCATATCCCGGGTTTGCCTACAGCTGATGAGCAAGCCTTTGAAGGCATTGAAATGTTCTTATATGATTTGGATTTTCCCGATACAAGTAGTGGAGTGGTTGAATCTGATTTGAACCCGATGATGATGATGAATATGGAGAATAACGGATATCAAGAATTTGGAAGTGGGAAGGCATCCAGCAGTGAGCTCCTGCACCACAGTACTCAATTTCAGGACCCAATTCATTATGATCCAGCTCATGGGATGTTCAAGAATAACCCTGATCCTTCAACTTCATATCAGAAGATGGGGACTGTTCCTCCCATGCAAGAGATGTCGGTATCCAAGAATACGATGATGTTTAACACCCATCCCACAAATTCCATGCCGCAGATGGGGTTGTCTGAGAATACGATGTTCGACATGGATCATAGCATCTCTATGCAACAAATATCGGCATATAGGCAGTACCTCTTGGACGGTTATTTGTTCTTTCATTCTTGA 993 0.43 MGRGKLKMELIANEKLRCRTFRNRQKGLKKKLQELSTLCDVEACMIMYCDQNGNGSYSSQPDVWPENHYEVQRIVNKYVKADHGKRAVDLSDILESRKRKAEVELQKLQEKNGETKGQTSETGLELDGLSYENLMEINDQLDRKLEHVMSLIDLKKGEAGLMSKTPVNSSHIPGLPTADEQAFEGIEMFLYDLDFPDTSSGVVESDLNPMMMMNMENNGYQEFGSGKASSSELLHHSTQFQDPIHYDPAHGMFKNNPDPSTSYQKMGTVPPMQEMSVSKNTMMFNTHPTNSMPQMGLSENTMFDMDHSISMQQISAYRQYLLDGYLFFHS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0711 330 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vvi17g0711 330 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vvi17g0711 330 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Vvi17g0711 330 Coils Coil 91 118 - -
Vvi17g0711 330 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0711 330 SUPERFAMILY SRF-like 1 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0711 Vvi-Chr17 7908220 7909212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0711 1 255 Type I MADS-box Gene Family AT5G55690 24.710 7.27e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi17g0711 SRF-TF 6.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0711 - - vvi:104882399 655.595