Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0697 ATGGAAGTTGCAGAAGGAGACAAAGCTAGGTTCAGTCTCAAAAAACTGCCAATGGGATATAGATTCTTGCCCACAGACGAAGAACTGGTGGTGTATTACTTGATCAACAAAGCATTTTACAGGCCTCTTCCAGCTGAAGTCATTCCAGACATCCGTGAAAGAGAGTTTTATAGCAGTCCTCCTTCCGATCTAGATTTATTAATTCTGGACATGGTTGATAAGAAATTGACCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAACAGTCGGACAGTCGGACATGTGGGAAATGTTGGGAGCTGATCTAAGTGTTGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATCGAAGTGGTGAGGGGAGAGCCCCAATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGCGATAATTTGATTCTTCACCGCCGTAGTAAGTAG 507 0.428 MEVAEGDKARFSLKKLPMGYRFLPTDEELVVYYLINKAFYRPLPAEVIPDIREREFYSSPPSDLDLLILDMVDKKLTTLKLPSGEVRLISKNCSTVGQSDMWEMLGADLSVVRGVVMNPVDHPHRSGEGRAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILHRRSK* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0697 168 SUPERFAMILY Translation proteins SH3-like domain 73 165 IPR008991 -
Vvi17g0697 168 PANTHER RIBOSOMAL PROTEIN L2 74 166 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi17g0697 168 MobiDBLite consensus disorder prediction 152 168 - -
Vvi17g0697 168 Pfam Ribosomal Proteins L2, C-terminal domain 111 143 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi17g0697 168 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Vvi17g0697 168 MobiDBLite consensus disorder prediction 120 168 - -
Vvi17g0697 168 SUPERFAMILY NAC domain 13 64 IPR036093 GO:0003677|GO:0006355
Vvi17g0697 168 Pfam No apical meristem (NAM) protein 17 65 IPR003441 GO:0003677|GO:0006355
Vvi17g0697 168 Gene3D Ribosomal protein L2, domain 3 95 167 IPR014726 -
Vvi17g0697 168 Gene3D - 65 94 IPR014722 -
Vvi17g0697 168 SMART Ribosomal_L2_C_2 66 145 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0697 Vvi-Chr17 7690973 7692254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0697 12 51 NAC Transcription Factor Family AT1G69490 52.500 1.08e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi17g0697 NAM 3.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0697 K02886 - csin:114312042 143.665