Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0696 ATGGCGACGGCGAGAACTGTGAAGGATGTTTCTCCTCACGAGTTTGTCAACGCTTATGCCGCTCATCTCAAACGCTCCGGCAAGATTGAACTTCCTCACTGGACTGATATTGTGAAGACTGCTACATTCAAGGAGCTTGCCCCATATGATCCTGATTGGTACTATATTAGAGCTGCTTCCATGGCAAGGAAAATTTACTTGAGGGGTGGCATTGGTGTTGGTGCCTTCCGGAGGATTTATGGTGGAAGCAAGAGGAATGGCAGTCGCCCACCCCATTTCTGTAAGAGCAGTGGTTCTATTGCTCGCCACATACTCCAGCAATTGCAGACGATGAACATCATTGAACTTGATTCAAAGGGGGGAAGGAGAATCACATCTAGTGGCCAGAGGGATCTAGATCAAGTTGCCGGACGGATTGCAGTTGCCCATTGA 432 0.4861 MATARTVKDVSPHEFVNAYAAHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYIRAASMARKIYLRGGIGVGAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQTMNIIELDSKGGRRITSSGQRDLDQVAGRIAVAH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0696 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g0696 143 Gene3D - 1 142 IPR036388 -
Vvi17g0696 143 FunFam 40S ribosomal protein S19 2 143 - -
Vvi17g0696 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g0696 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi17g0696 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vvi17g0696 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0696 Vvi-Chr17 7682689 7685520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0696 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 88.732 1.01e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0696 K02966 - vvi:100255295 292.352