Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0690 ATGGGTCTCTTTTCCAGGTCAAATTATGAAGTTGCTGAACTGACATGGGAAAATGGCCAGCTAGCCATGCATGGACTTGGTGGGCTCCTTCCCACTGCTCCAACAAAACCCACATGGGGTAGGGCCGGAGACACGCTAGAGTCGATAGTGCACCAAGCCACGTGCCACAACCAAAACTCAAACTTCATCCACCATGCCCAGAACCTGGCCAATATGAAGTCTACAGTCGGGTCCTCCGCCCATGTACAGACCGGAAATCAAGGGTTGATGAAGAAGAGGACTCGTTCGGATTCCGCTCATTGTGGAAGAAATTTTAGTACTAATGTTCATGAAGCTGAGCGTGCAGACCGCAGTGCATGTGCTAGTGCTAGTGCCACATTTTGCAGGGACAATGAAACAACCATGATGACATGGCCCTCCTCTGAATCTCCTCGCAGCTTGAAGGCCAAAACTACAGATGAAGACTCGGCTTGTCATGGTGGATCGGAAAACCAGGATGAAGATAGGGAGACTAAAACTCAGACAGGCCGCTCTCACTCAACAAGAAGAAGCCGAGCTGCTGCTATTCATAATCAGTCGGAGCGGAGACGTCGAGATAGGATTAATCAGAAGATGAAAACTCTGCAGAAGCTAGTACCCAACTCAAGCAAGACTGATAAGGCATCAATGCTTGATGAGGTGATTGAGTACTTGAAACAACTTCAAGCACAGGTTCAGATGATGAGTGTAAGAAATATGCCTCAAATGATGATGCCTATGGGAATGCAGCAACAACTTCAAATGTCTCTCCTAGCGCGTATGGGCATGGGCGTTGGCCTTGGCATGGGCATGGGAATGCTTGATATGAGTGCCGTCCCTCGTGCTGCACCTCAAACACTCCCTTCTCTCCTCCATGCCAACCCAGTTGTTGCTGCCACTCCAACATTTGTCCCTCCTCCCTTTGTAGTGCCACCCATGATGCCATCCTCATCACAACCAAAGTCTGATGCGGGCGCCAACGCAGCAGTCCCTTTGCAGGATCCATACTGCGCTTTTCTAGCACAATCGATGAATATGGACCTCTACCACAAGATGGCAGCACTATATCGGCAACATGTCAATCACAAGGCACAACCAACAAGCAGTCCACCACACTCAAACCATGACCTAGGGGATTGA 1158 0.4948 MGLFSRSNYEVAELTWENGQLAMHGLGGLLPTAPTKPTWGRAGDTLESIVHQATCHNQNSNFIHHAQNLANMKSTVGSSAHVQTGNQGLMKKRTRSDSAHCGRNFSTNVHEAERADRSACASASATFCRDNETTMMTWPSSESPRSLKAKTTDEDSACHGGSENQDEDRETKTQTGRSHSTRRSRAAAIHNQSERRRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMSVRNMPQMMMPMGMQQQLQMSLLARMGMGVGLGMGMGMLDMSAVPRAAPQTLPSLLHANPVVAATPTFVPPPFVVPPMMPSSSQPKSDAGANAAVPLQDPYCAFLAQSMNMDLYHKMAALYRQHVNHKAQPTSSPPHSNHDLGD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0690 385 FunFam transcription factor UNE10 isoform X1 180 245 - -
Vvi17g0690 385 MobiDBLite consensus disorder prediction 188 204 - -
Vvi17g0690 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 247 IPR036638 GO:0046983
Vvi17g0690 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
Vvi17g0690 385 MobiDBLite consensus disorder prediction 147 177 - -
Vvi17g0690 385 MobiDBLite consensus disorder prediction 134 204 - -
Vvi17g0690 385 Pfam Helix-loop-helix DNA-binding domain 190 235 IPR011598 GO:0046983
Vvi17g0690 385 CDD bHLH_AtPIF_like 185 245 IPR047265 -
Vvi17g0690 385 Coils Coil 191 211 - -
Vvi17g0690 385 SMART finulus 191 240 IPR011598 GO:0046983
Vvi17g0690 385 Gene3D - 180 245 IPR036638 GO:0046983
Vvi17g0690 385 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 374 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0690 Vvi-Chr17 7609992 7612967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0690 8 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 50.199 6.66e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi17g0690 HLH 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0690 - - vvi:100262138 630.557