Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0688 ATGCATGATGAATCCATGGAGATCACAGAAGAGCAGCGAAAGCGAGCCGAAGCGAACCGTCTCGCAGCCCTAGAAAAGCGTAAAGCAGCCCTTGAACCTGCTAAACAATCAGACCCATGGAAGCTCTTCAAGTGCCGAAAGGTCTCTCGCGAATCCACCAGCGCAGCTACCGCCATCCATCCTCCCAAGCCCCAAAACGCGTCAAACGATGCGTTCTTGAAACCCCATTTGACTGAAAAGTTTCGGGTCAGGCTCGAAATCTGCTCTCCAGACTCGTTCTCGATCACGCCCAAGGCGGTGCATGGTTTTGCGTACCCTGGAGAAGCTGAGTGCTTGCAAAGGCTGAATGATTGTCTTGCAAATGTTGTGCCATCGCACTACACACAAAACCACAGTGGTGGAAAAGCTTGCGTCTACAAACTTGGGGATTATGATGCAGTTTTGAGATGCTTGAAAAATTCCAAGGGCATTGAATTTGAAGAGATACCTTGGGGAACTTTCAATGTTGTTGAGAGGCTTTCACATTCCTTTGTATTAGAGCAGTGGATGCCATGCAGACCGGAACATTTGTCTGATGATAAGGTTGACGAATTGATAGGGATGCTACCTAAAAGGTTGTTAGATGCACTTTTGCCTTTCCAACTTGATGGTGTAAGATTTGGTCTGAGAAGAGGTGGTCGGTGTCTAATTGCCGATGAAATGGGGCTTGGGAAAACACTCCAGGCCATTGCTATTGCATCCTGTTTCATGAATGAGGGCCCTATACTTGTTGTTTGCCCAGCTATTTTGCGATTTTCATGGGCAGAAGAATTGGAGCGTTGGCTTCCCTTTTGTTTGCCTGCTGATATCCATCTTGGTAATACTTCCTTTTTTTATGCTTCTTTTTTAGTAAGCAAGTAG 900 0.4644 MHDESMEITEEQRKRAEANRLAALEKRKAALEPAKQSDPWKLFKCRKVSRESTSAATAIHPPKPQNASNDAFLKPHLTEKFRVRLEICSPDSFSITPKAVHGFAYPGEAECLQRLNDCLANVVPSHYTQNHSGGKACVYKLGDYDAVLRCLKNSKGIEFEEIPWGTFNVVERLSHSFVLEQWMPCRPEHLSDDKVDELIGMLPKRLLDALLPFQLDGVRFGLRRGGRCLIADEMGLGKTLQAIAIASCFMNEGPILVVCPAILRFSWAEELERWLPFCLPADIHLGNTSFFYASFLVSK* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0688 299 Pfam SNF2-related domain 228 279 IPR000330 GO:0005524|GO:0140658
Vvi17g0688 299 Gene3D - 187 292 IPR038718 -
Vvi17g0688 299 Coils Coil 6 26 - -
Vvi17g0688 299 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 10 287 - -
Vvi17g0688 299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0688 Vvi-Chr17 7593722 7599706 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi17g0688 SNF2_N 1e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0688 K25861 - vvi:100267344 583.178