Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0680 ATGTTCCATCCCCATGAAACCTCCTATCCCAATTTCACCTACTTGCCTCACCAATCCCATTCCACAATCCCCAACATTAGCCTTGGTCCGCTCTTCTCTCAACCTGTTCTTCATCCCACCAGCATCGATCCGTATTCTCACTCCAGCTTATATCCTTCAATTCATGTTGTATTGGGCGGCCAGGCAACAAGATATGAAGACCCAAATGCGGTTTCACAGAATTGGGTTGTTAAGAACGCTGATCCCATTACATATGAACCTGCTGTTAAGCCTTCAAATGAGAAGGCAGTAGTGTCAACAAGTTTGAACTCCTTATGGAGCAACAATCAACCTTTGGTGAATGATATGACAATTAGAATACCAGAGCAAACCAAGGTCATTCTGTCCTTGAGGTGTGAAGTTTGCAACATTGATTGTAATAGCAAAGACGTTTTGGAGAAGCATATATCAGGGAAGAAACACAACCGAAATTTACAAATTCATACTAATCAAGTTTCTACTACAATATCCACAAAAGATTCCATTGGAATGAACACTGGTAGTCTGGTAGGCCAAATTGGCAGTATAAGTCATCAAAGAATATTAGGGTCAGCAGGTGCAGCTGCTGGTCAGTCTTTGGTGGCAAAGAGATTGAAGCTTGTGGAAGGTGGTGCAGTAGCAGATTCTGTGAGGACCTGCACAATATGCAACGTTGCTTGCAATAGCCAAGTAGTGTTCCAGAAACATCTTACTGGTAAAAAGCATGCTGCCCAGGTTGGCTTAAGACCTCAACATTTAGTTGTCCAGCCTCATAGCAATGGCATATGGAGTAAAGCCCCAAAAAAACCCAAGTTTGTTCAATCTGCATGGTGTGAAGTCTGCAAAATCAATTGTAACAGCAGTGACGTCTTCACCAAACACATACTGGGAAAGAAACACCTGAAGAACTTGGAAAAACTAGCAGAACCAAAAAAGGACACCAGCACCTCTGCCTCAACTGCTGCACAGGTCACCACAAATCCGATAATAGGACCAATGGAAAGGCTGGATGCTAGTAAAGGTAAATCAACTGCTGCGGTAGAGCCAGGAAAGAGGCCAGCCCAATTGCAGACACAACAAAAGGATCTGGACATAAAGAAACAGAAAATTGTAGAAGGTGGAGCAGCAGCTGGTGCAGTTAGAGCTTGTACTATATGCAATGTGGTCTGCAATAGCCAGACAGTCTTCAACATTCATCTCTCCGGCCAGAAGCATGCTTCCATGGTGAAGAAACTGGGTGAATCCACTGCAGCATAA 1275 0.4369 MFHPHETSYPNFTYLPHQSHSTIPNISLGPLFSQPVLHPTSIDPYSHSSLYPSIHVVLGGQATRYEDPNAVSQNWVVKNADPITYEPAVKPSNEKAVVSTSLNSLWSNNQPLVNDMTIRIPEQTKVILSLRCEVCNIDCNSKDVLEKHISGKKHNRNLQIHTNQVSTTISTKDSIGMNTGSLVGQIGSISHQRILGSAGAAAGQSLVAKRLKLVEGGAVADSVRTCTICNVACNSQVVFQKHLTGKKHAAQVGLRPQHLVVQPHSNGIWSKAPKKPKFVQSAWCEVCKINCNSSDVFTKHILGKKHLKNLEKLAEPKKDTSTSASTAAQVTTNPIIGPMERLDASKGKSTAAVEPGKRPAQLQTQQKDLDIKKQKIVEGGAAAGAVRACTICNVVCNSQTVFNIHLSGQKHASMVKKLGESTAA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0680 424 SUPERFAMILY beta-beta-alpha zinc fingers 388 418 IPR036236 -
Vvi17g0680 424 Pfam Zinc-finger of C2H2 type 225 248 - -
Vvi17g0680 424 Pfam Zinc-finger of C2H2 type 131 154 - -
Vvi17g0680 424 Pfam Zinc-finger of C2H2 type 389 411 - -
Vvi17g0680 424 Pfam Zinc-finger of C2H2 type 283 306 - -
Vvi17g0680 424 MobiDBLite consensus disorder prediction 347 366 - -
Vvi17g0680 424 SUPERFAMILY beta-beta-alpha zinc fingers 219 252 IPR036236 -
Vvi17g0680 424 PANTHER ZINC FINGER PROTEIN 385B-LIKE 132 252 - -
Vvi17g0680 424 SUPERFAMILY beta-beta-alpha zinc fingers 111 161 IPR036236 -
Vvi17g0680 424 SMART ZnF_U1_5 127 161 IPR003604 GO:0003676|GO:0008270
Vvi17g0680 424 SMART ZnF_U1_5 279 313 IPR003604 GO:0003676|GO:0008270
Vvi17g0680 424 SMART ZnF_U1_5 384 418 IPR003604 GO:0003676|GO:0008270
Vvi17g0680 424 SMART ZnF_U1_5 221 255 IPR003604 GO:0003676|GO:0008270
Vvi17g0680 424 SMART c2h2final6 130 154 IPR013087 -
Vvi17g0680 424 SMART c2h2final6 387 411 IPR013087 -
Vvi17g0680 424 SMART c2h2final6 282 306 IPR013087 -
Vvi17g0680 424 SMART c2h2final6 224 248 IPR013087 -
Vvi17g0680 424 SUPERFAMILY beta-beta-alpha zinc fingers 265 313 IPR036236 -
Vvi17g0680 424 Gene3D Classic Zinc Finger 364 417 - -
Vvi17g0680 424 Gene3D Classic Zinc Finger 210 255 - -
Vvi17g0680 424 Gene3D Classic Zinc Finger 269 313 - -
Vvi17g0680 424 Gene3D Classic Zinc Finger 121 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0680 Vvi-Chr17 7501924 7507422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0680 224 420 C2H2 Transcription Factor Family AT5G61190 27.273 1.15e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi17g0680 zf-met 1.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0680 - - vvi:100251937 818.535