Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0679 ATGGATTTCTCCTCCCCCAACCAGAAGCAAGGCCACGAACTGGTCGAATTCAAACACGTTTGCAAGTTCTGCAAGAAGAGCTTCCCCTGTGGGAGATCTTTGGGAGGCCATATGAGGTCTCATATGATCAACAGCTCTTTTGAAACTGATGAAAAGCTCAGCAAAACCAAGCTCTCATCTCTCCACAAAGCTGCAACCAATCCTGATTCATGGACTAGTGCTAATCAGAAGTTGGTCATGGATAGCCAGTCCGATACTGAAACTGCAGTCCCCAATCGCAAAAAGAGATCAAGGAGAAGAACAAGGTACATGGCCACTGCAACCTCCTCTTCTTTTTCTTTTGCTAATGCTTCTTCCTCTGTTTCTGAGATTGAGCAAGAACAAGAAGAGGTTGCTATAAGTTTGATGATGCTTTCAAGGGATTCTGGTAACTGGGGTGGTTTGAATTCTGTTGTGAAGCTGAAGAAGCTCATAAAAGATGAGAAGTTCAATCCTTCTGCTTTGGATTCGGAGGATTTCCAGTTTTACTGCAAACAATCCGAATTCGGGGCTTCTGGGAATTCAAGAAATGATTCCAAGTTGAACAAATCTGAAGTTCTGGAGACTAATAAAAGCAACAAGCTTAAGGTGAACTGCTCAAAGAAAACGACTAATAATGATGAGCTAGCCACAAAAAGATCAAAGCTCACTAAGCCCTGCAACAACCATAGCCCCAGCCGCAGCCCTGGCCCCATCCATGGCCACACTGCCAGTGCCTCTGCTGTGAAGGCTGAGACAATTTTGGGATCAAAGAAGAGTAAGGGCCATGAGTGCCCAATTTGCCTCAAGGTTTTCTCATCAGGCCAGGCATTGGGTGGTCACAAGAGATCACATTTGGTTGGTGGGTCAGATACCAGAGGCAGCCAAACCATTGTTATTCCCAAGCCCCTTCCAGAGATCAGAGACCTTCTTGATCTTAACCTTCCTGCTCCTGCAGAGGAAGAGGGCGGGTTCAAGGCATGGTGGGTTGGAAGCAGCCACAAGCATGAGCCACTGGTGGGCATGATATCAAACTGA 1056 0.464 MDFSSPNQKQGHELVEFKHVCKFCKKSFPCGRSLGGHMRSHMINSSFETDEKLSKTKLSSLHKAATNPDSWTSANQKLVMDSQSDTETAVPNRKKRSRRRTRYMATATSSSFSFANASSSVSEIEQEQEEVAISLMMLSRDSGNWGGLNSVVKLKKLIKDEKFNPSALDSEDFQFYCKQSEFGASGNSRNDSKLNKSEVLETNKSNKLKVNCSKKTTNNDELATKRSKLTKPCNNHSPSRSPGPIHGHTASASAVKAETILGSKKSKGHECPICLKVFSSGQALGGHKRSHLVGGSDTRGSQTIVIPKPLPEIRDLLDLNLPAPAEEEGGFKAWWVGSSHKHEPLVGMISN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0679 351 SUPERFAMILY beta-beta-alpha zinc fingers 19 291 IPR036236 -
Vvi17g0679 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
Vvi17g0679 351 MobiDBLite consensus disorder prediction 228 246 - -
Vvi17g0679 351 SMART c2h2final6 19 41 IPR013087 -
Vvi17g0679 351 SMART c2h2final6 269 291 IPR013087 -
Vvi17g0679 351 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Vvi17g0679 351 MobiDBLite consensus disorder prediction 217 249 - -
Vvi17g0679 351 ProSitePatterns Zinc finger C2H2 type domain signature. 271 291 IPR013087 -
Vvi17g0679 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 291 IPR013087 -
Vvi17g0679 351 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 16 56 - -
Vvi17g0679 351 MobiDBLite consensus disorder prediction 80 100 - -
Vvi17g0679 351 Pfam C2H2-type zinc finger 269 291 - -
Vvi17g0679 351 Pfam C2H2-type zinc finger 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0679 Vvi-Chr17 7475229 7477459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0679 264 327 C2H2 Transcription Factor Family AT1G26610 61.538 5.71e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi17g0679 zf-C2H2_6 1.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0679 - - vvi:100241686 263.462