Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi17g0679 | ATGGATTTCTCCTCCCCCAACCAGAAGCAAGGCCACGAACTGGTCGAATTCAAACACGTTTGCAAGTTCTGCAAGAAGAGCTTCCCCTGTGGGAGATCTTTGGGAGGCCATATGAGGTCTCATATGATCAACAGCTCTTTTGAAACTGATGAAAAGCTCAGCAAAACCAAGCTCTCATCTCTCCACAAAGCTGCAACCAATCCTGATTCATGGACTAGTGCTAATCAGAAGTTGGTCATGGATAGCCAGTCCGATACTGAAACTGCAGTCCCCAATCGCAAAAAGAGATCAAGGAGAAGAACAAGGTACATGGCCACTGCAACCTCCTCTTCTTTTTCTTTTGCTAATGCTTCTTCCTCTGTTTCTGAGATTGAGCAAGAACAAGAAGAGGTTGCTATAAGTTTGATGATGCTTTCAAGGGATTCTGGTAACTGGGGTGGTTTGAATTCTGTTGTGAAGCTGAAGAAGCTCATAAAAGATGAGAAGTTCAATCCTTCTGCTTTGGATTCGGAGGATTTCCAGTTTTACTGCAAACAATCCGAATTCGGGGCTTCTGGGAATTCAAGAAATGATTCCAAGTTGAACAAATCTGAAGTTCTGGAGACTAATAAAAGCAACAAGCTTAAGGTGAACTGCTCAAAGAAAACGACTAATAATGATGAGCTAGCCACAAAAAGATCAAAGCTCACTAAGCCCTGCAACAACCATAGCCCCAGCCGCAGCCCTGGCCCCATCCATGGCCACACTGCCAGTGCCTCTGCTGTGAAGGCTGAGACAATTTTGGGATCAAAGAAGAGTAAGGGCCATGAGTGCCCAATTTGCCTCAAGGTTTTCTCATCAGGCCAGGCATTGGGTGGTCACAAGAGATCACATTTGGTTGGTGGGTCAGATACCAGAGGCAGCCAAACCATTGTTATTCCCAAGCCCCTTCCAGAGATCAGAGACCTTCTTGATCTTAACCTTCCTGCTCCTGCAGAGGAAGAGGGCGGGTTCAAGGCATGGTGGGTTGGAAGCAGCCACAAGCATGAGCCACTGGTGGGCATGATATCAAACTGA | 1056 | 0.464 | MDFSSPNQKQGHELVEFKHVCKFCKKSFPCGRSLGGHMRSHMINSSFETDEKLSKTKLSSLHKAATNPDSWTSANQKLVMDSQSDTETAVPNRKKRSRRRTRYMATATSSSFSFANASSSVSEIEQEQEEVAISLMMLSRDSGNWGGLNSVVKLKKLIKDEKFNPSALDSEDFQFYCKQSEFGASGNSRNDSKLNKSEVLETNKSNKLKVNCSKKTTNNDELATKRSKLTKPCNNHSPSRSPGPIHGHTASASAVKAETILGSKKSKGHECPICLKVFSSGQALGGHKRSHLVGGSDTRGSQTIVIPKPLPEIRDLLDLNLPAPAEEEGGFKAWWVGSSHKHEPLVGMISN* | 352 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi17g0679 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 19 | 291 | IPR036236 | - | |
Vvi17g0679 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 19 | 41 | IPR013087 | - | |
Vvi17g0679 | 351 | MobiDBLite | consensus disorder prediction | 228 | 246 | - | - | |
Vvi17g0679 | 351 | SMART | c2h2final6 | 19 | 41 | IPR013087 | - | |
Vvi17g0679 | 351 | SMART | c2h2final6 | 269 | 291 | IPR013087 | - | |
Vvi17g0679 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 21 | 41 | IPR013087 | - | |
Vvi17g0679 | 351 | MobiDBLite | consensus disorder prediction | 217 | 249 | - | - | |
Vvi17g0679 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 271 | 291 | IPR013087 | - | |
Vvi17g0679 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 269 | 291 | IPR013087 | - | |
Vvi17g0679 | 351 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 16 | 56 | - | - | |
Vvi17g0679 | 351 | MobiDBLite | consensus disorder prediction | 80 | 100 | - | - | |
Vvi17g0679 | 351 | Pfam | C2H2-type zinc finger | 269 | 291 | - | - | |
Vvi17g0679 | 351 | Pfam | C2H2-type zinc finger | 19 | 42 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi17g0679 | Vvi-Chr17 | 7475229 | 7477459 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi17g0679 | 264 | 327 | C2H2 Transcription Factor Family | AT1G26610 | 61.538 | 5.71e-19 | 85.9 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vvi17g0679 | zf-C2H2_6 | 1.2e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi17g0679 | - | - | vvi:100241686 | 263.462 |