Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0671 ATGGAGGATATGATAGTCAAACAGTGTCTTATTGGGCAGGGAGCATCTGGAAAAGTCTACATGGCCGTCTCTAGAAACGGTGGCGGCAGTCGACTGCTGGCAGTGAAATCTTCGGTTTGTTCTTCTTCCTCTTCTTCCCTTCTCAGGGAGGAAGAGATACTCCGCTCTCTGGGGGCTTGCCCTGATGTTGTTGAGTGCTTCGGTGGTTATTCAAGCATGGAAGTTGATGGCAGTTGGGTTTATAATCTAATTCTTGAGTACGCGCCCGGAGGAACTCTGAGGAGTTTGATGGAAAGGCGCAGAGGTAAATTGTCAGAATCTGAAGTTCGGGATTACGCAAGAATGATAATCAGAGGGCTTTGCTACATTCATCAGAAAGGATTGGTTCACTGCGATCTGAAGCCGGATAATGTTCTAGTTTTTCCTGGCGTAGATGGTGGGAATGTGGTTAAGATTGCTGATTTTGGACTGGCTAAAAGGGTGGGAGAAGAGGAAGTGCCCCGAGTCAGCTTCCGGGGCACGCCGTCTTACATGTCGCCGGAGTCTTTGGCTTTGAAGGAGCATGATGCGCCCATGGATATATGGTCCCTAGGGTGCACTATTATTGAGATGGTGACAGGACAAAGGGTCTGGACTGGCTGCAAGCGTGTGGGTGGGATGGTTGAGCATGTGGTGGTTAACAAGCAAGTACCCAAAACACCTGAATTTCTGTCCCAGTATGGGAAAGATTTTTTGGAGAAGTGCTTCGTGAGAGATCCGAAGTGGAGATGGACGGCTGAGATGCTCCTCCATCACCCTTTTGTGGCCCCCCCTCCCCCTCCTAACGGGACCCCGATACTAATGACCGGCTTGCTACCCTTTAGATATTGTCCCCTGAGTGATACGGGACGAAAGTTTTCTTCGAGCTTTCCTTCTTTGATGGGCCGCTCTTTAACACCGTTGCTTCCACCCGTTTTACTTCCTTCTTCTTCTTCTTCTTGTTCATCTTCCGAGGAGTTGCTTCCAACTATTTCAATTCCTCCCACATTCTTTAATTCTTTGCCTCATTCCTTACCTTCTTCTGAGGAGCCTTCTATTTGTGAATTGCTTTCGAATCTTTCTCTTCCCTCTGGATGGGACAGTGTTGAAGAAGTGACTCCTGGGTCTCGCAGTCAATGA 1158 0.4853 MEDMIVKQCLIGQGASGKVYMAVSRNGGGSRLLAVKSSVCSSSSSSLLREEEILRSLGACPDVVECFGGYSSMEVDGSWVYNLILEYAPGGTLRSLMERRRGKLSESEVRDYARMIIRGLCYIHQKGLVHCDLKPDNVLVFPGVDGGNVVKIADFGLAKRVGEEEVPRVSFRGTPSYMSPESLALKEHDAPMDIWSLGCTIIEMVTGQRVWTGCKRVGGMVEHVVVNKQVPKTPEFLSQYGKDFLEKCFVRDPKWRWTAEMLLHHPFVAPPPPPNGTPILMTGLLPFRYCPLSDTGRKFSSSFPSLMGRSLTPLLPPVLLPSSSSSCSSSEELLPTISIPPTFFNSLPHSLPSSEEPSICELLSNLSLPSGWDSVEEVTPGSRSQ* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0671 385 ProSiteProfiles Protein kinase domain profile. 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0671 385 CDD STKc_MAPKKK 5 268 - -
Vvi17g0671 385 Gene3D Transferase(Phosphotransferase) domain 1 1 270 - -
Vvi17g0671 385 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Vvi17g0671 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vvi17g0671 385 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 6 325 - -
Vvi17g0671 385 SUPERFAMILY Protein kinase-like (PK-like) 9 346 IPR011009 -
Vvi17g0671 385 SMART serkin_6 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0671 385 Pfam Protein kinase domain 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0671 Vvi-Chr17 7330090 7331247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0671 6 269 MAP Kinase Kinase Kinase AT4G36950 44.526 7.60e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi17g0671 Pkinase 1.5e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0671 - - vvi:100246704 712.99