Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0668 ATGTTTAATATATTGTTTGCAGTTGAAAGGATCTCAGAAGAAGTAACTGAAAAAAAAAGAATGGATGATGGGAGGAGGGGGGATGTTATGCCATTAGAGCTTGCAATGAAGAGAGAGTCTGCATATCGAAAGAAGGTAGAGATGATGTTGTCGCAACTATATGGTGGTGAATCTAGGGAAGACCCTTTCTCTTCCCAGGTGCCATCTTCAAGTCCAAGTTCAGGGCCAAGCTTATCAGGACCAAAGCGAAAAACACCGACTAGGACCTCCCAGTGCCTTCCACCTCAGCAGCTGCAACTGCTTTATAGTAGTCACACACTTGGAAACAGGAAAGATGACTTATTTTGCAAGGTCTGCCAAGTGGCATGCCCAAGCTCTTTTCATCTCAAGCAGCATCTGATAGGTCAGAAGCACAAGGACACACTTGACTTGAAATCTGGTAGAAACATTAGAGAAGAGGATGCAAATACCAGAAAATGGTGTGACTTGTGCAAAATTTGGTGCATTAACAAATATTCACTCGAACAGCATTTCAAAGGTAAAAAGCATCAAGACAACGTACAAGAGCTGGAACTAGGTGGGAAAGAAGGCCAAAGGAAAACAAATCAGGTAAAACTGTACTGCGAACTGTGTAAACTTTGGTGCATGGATGAGTATGCATTCAATCAGCACCTCAAAGGCAAAAAGCACATCCTTAACCTCCACACCTTTGAAGAGAAAAGGACGGCAAAAGGGAAAGGATTGGCTGTGGACCAAAGCTCAACTAGAAAGAACTGA 777 0.4286 MFNILFAVERISEEVTEKKRMDDGRRGDVMPLELAMKRESAYRKKVEMMLSQLYGGESREDPFSSQVPSSSPSSGPSLSGPKRKTPTRTSQCLPPQQLQLLYSSHTLGNRKDDLFCKVCQVACPSSFHLKQHLIGQKHKDTLDLKSGRNIREEDANTRKWCDLCKIWCINKYSLEQHFKGKKHQDNVQELELGGKEGQRKTNQVKLYCELCKLWCMDEYAFNQHLKGKKHILNLHTFEEKRTAKGKGLAVDQSSTRKN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0668 258 SUPERFAMILY beta-beta-alpha zinc fingers 155 192 IPR036236 -
Vvi17g0668 258 SUPERFAMILY beta-beta-alpha zinc fingers 107 147 IPR036236 -
Vvi17g0668 258 Pfam Zinc-finger of C2H2 type 160 183 - -
Vvi17g0668 258 Pfam Zinc-finger of C2H2 type 115 138 - -
Vvi17g0668 258 Pfam Zinc-finger of C2H2 type 206 230 - -
Vvi17g0668 258 MobiDBLite consensus disorder prediction 58 91 - -
Vvi17g0668 258 PANTHER OS06G0651300 PROTEIN-RELATED 60 196 - -
Vvi17g0668 258 MobiDBLite consensus disorder prediction 57 91 - -
Vvi17g0668 258 Gene3D Classic Zinc Finger 197 236 - -
Vvi17g0668 258 SUPERFAMILY beta-beta-alpha zinc fingers 203 234 IPR036236 -
Vvi17g0668 258 SMART ZnF_U1_5 203 237 IPR003604 GO:0003676|GO:0008270
Vvi17g0668 258 SMART ZnF_U1_5 156 190 IPR003604 GO:0003676|GO:0008270
Vvi17g0668 258 SMART ZnF_U1_5 111 145 IPR003604 GO:0003676|GO:0008270
Vvi17g0668 258 Gene3D Classic Zinc Finger 150 196 - -
Vvi17g0668 258 Gene3D Classic Zinc Finger 104 149 - -
Vvi17g0668 258 SMART c2h2final6 114 138 IPR013087 -
Vvi17g0668 258 SMART c2h2final6 206 230 IPR013087 -
Vvi17g0668 258 SMART c2h2final6 159 183 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0668 Vvi-Chr17 7313854 7315836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0668 114 248 C2H2 Transcription Factor Family AT5G61190 21.973 2.81e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0668 - - vvi:100853199 457.218