Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0666 ATGCGGGACGAGGAAACTGATATCCGGGTTGTCGGGTTAATGATTTCCCTAGTCTTGATCACAGGCAGAATTGTGGCTGGAGATTCTCTGGAGACTGACAGAGAAGTTCTGCTGAGTCTGAAAAAATTTCTAGAGGATAACAATCAAGTGAATCGAGGGCGATACCAGGAGTGGAATTTAAGTAGTTGGAATCCATGTGATTGGCCTGGAATTTTGTGCAGCAATGATGGGAGGGTGATCAGTGTCAACCTTTCAGATAATAGTATTTCAGGTGAAATTTTCCACAACTTCTCCGCATTGACAAAGCTTTCTCATCTTGATTTGTCGAAAAACACTCTGGGTGGCCGGATTCCGGCGGACCTGAGGCGGTGTGAAAGCCTTGTATATCTCAACCTGTCGCACAATATCATTAATGATGAACTGAACTTGACGGGGTTGAAGAGTTTGGAGGTTCTTGATCTGTCTATCAATAGGATTGGTGGCGAAATTCAGTTGACTTTTCCAGCAGTTTGTGACAGATTGGTTCTTGCAAACATTTCTGAGAATAATTTCACTGGGAGCATCGACAATTGCTTCGACGAGTGCAAGAGTTTGAAGTATCTGGATTTGAGCTCCAACAATTTCAGTGGGGAGATATGGCAGGGGTTCGCAAGGCTTCAGCAGTTTTCGGCGTCGGAAAACAGGTTTGGTGGGGTGGTTTCACCCTCCATTTTTGGTGGGGTTTGTGCACTGGGCCTGCTGGAATTGTCGAAGAACAGTTTCGGGGGAGAGGTTCCGGGAGAGATTGCCAATTGCACAAGCCTGCGCATTTTAAATCTGTGGGGAAACCATTTCACAGGGCCAATTCCCCCAGAACTGGGATCACTTTCGAGTCTTGAGGGTTTGTTCTTGGGGAACAACAATTTTTCAAGGCAGGTTCCAGAGTCCCTACTGAATTTGAGTAGCTTGGCATTTTTGGATCTGAGCAAGAACAATTTTGGGGGAGAGATTCAGGAAATTTTTGGGAAATTCAAGCAGGTCAGGTTTCTTGTATTGCATACTAATTCATACACTGGGGGTATATATTCATCTGGAATTCTCAAGTTATCCAATATTTCCCGATTGGACTTGAGCTTCAACAATTTCTCAGGTCCATTACCGGTTGAGCTCTCAGAAATGCCGAGTTTGGAGTTCTTGATTCTAGCCCACAATCAGTTTTCTGGAAGCATACCACCAGAATTTGGAAACATCCGGCGCCTACAAGCCCTGGATCTCTCCTTCAATAGCCTAAACGGTTCAATACCCAGTACTATTGGAAAGTTGAACTCTCTCTTGTGGTTAATGCTGGCAAACAATAGGTTTTCTGGGGAAATTCCTCCTGAGATAGGAAATTGCACTAGTTTATTGTGGTTAAACCTGGCCAACAACCAATTTTCTGGGAAAATTCCTCCGGAGTTGACAACTATTGGGAGAAATCCATTCCCAACCTTTGAAATGAATAGAAAAAACAGGGGAATCCCTGCTGGTTCAGGTGAGTGCCAAGTGATGATGAGGTGGATTCCAGCAAATTATCCTCCATTCAGTTTTGCGTATACACTCCTCACAAGAAGGAGCTGTAGAAGCTTATGGGATAATTTGCTTAAAGGGCATGGCCTTTTCCCAATGTGCCTTACTGGTTCTAAGGTGCGGACACTTCAAATTTCGGGTTACGTTCAGATCAGTGGGAATCAGTTTTCAGGTGAGGTCCCTCCAGAAATAAGGAATATGCAGAACTTTAGTCTCATCCAGATGGCTGCCAATAAGTTCTATGGAAAACTTCCTCCTGCGATAGGGCAATTGCCAGTTGTAGTCCTAAACTTGTCCGAGAACAATTTTTCAGGTGAAATTCCCATGGAAATCGGCAATCTTGGGTGCTTACAAAATCTGGATTTGTCATCCAATAACTTCTCTGGTACATTTCCAACCAGCCTCAACAACTTGAGTGAGTTGAACAAGTTCAACATATCATACAATCCATTGATCTCAGGTGTAATCCCATCGACTGGGCAATTGGCAACTTTTGAGAAAGAGTCCTTCCTTGGTGACCCACTATTGGTACTTCCACCCTTCATTGGCAACCCCTCAAATCACCCTCCGCCCACTGCGAAATCGGATGGGAAGCCAAAACAAAAATTTACTTCAGCTTTTGTGTTTTTAACTCTAACAGTGGCTTTCATCATGTGTGGACTTGTGTCACTTCTAGTCTGCGTTCTTTTGAAAAACCCAGTTGATTCATCAGGATATCTATTAGATGATTCCAAGTATAGACACGATTTTGCATCAAGTTCCGAAGTTTCATCACCATGGTTGTCAGGTGCTGTGAAGGTCATCCGTCTGGACAAAACAGCGTTCACATATGCTGATATTTTGATGGCCACATGTAACTTTTCGGACAGTAGAATTATTGGGAAAGGTGGATTTGGCACAGTGTACAGAGGGGTTCTGCCTGATGGAAGGGAAGTAGCTGTGAAGAAGCTACAAAGGGATGGCATTGAAGGGGAAAAGGAGTTCCGGGCTGAAATGGAGGTCCTAAGTGGAAATGGCCTTGGTTGGCCTCATCCCAACCTTGTAACACTCTATGGGTGGTGCCTTAATGGATCAGAAAAATTGCTGGTATATGAGTACATGGAAGGAGGGAGCTTGGAGGATCTGATTTCAGATCGGATGAGACTAACATGGAGGCGGCGTCTTGATGTAGCAATTGATGTGGCACGGGCACTAGTCTTTCTGCACCATGAGTGCTTCACTGCTATTGTTCATCGGGATGTCAAGGCCAGCAATGTTTTGCTAGACAGGAATGGGAAGGCCCGGGTCACTGATTTTGGTCTAGCTAGAGTTGTTGATGATGGGAATAGCCATGTCTCGACGATGGTGGCCGGGACAGTTGGTTATGTTGCACCTGAATATGGACAGACAGGGCAAGCCACTACAAAAGGCGATGTGTACAGTTTTGGGGTGCTGTCAATGGAGCTAGCTACTGGGAGACATGCCCTGGATGGGGGGGAAGAGTGCTTGGTGGAGTGGGCGAGACGGGTCATGGGAAATGGGAGGCAAGGGCTGAGTAGAGCAGTGATACCGGTCGTGATGTTGGGATCTGGGCTGGCTGAGGGGGCGGAGGAGATGCGTGAGCTGCTTCGAATTGGGATAAAATGCACAGCGGAGTCACCACAGGCAAGGCCTAATATGAAGGAGGTGCTAGCTATGCTGATCACGATTTTGAGCACCCAACAGGATTTCAGTTATGGGTCCTCTCCTCCTAGTTCTGAAATGTCTGGATTGGAGACTTGA 3306 0.4574 MRDEETDIRVVGLMISLVLITGRIVAGDSLETDREVLLSLKKFLEDNNQVNRGRYQEWNLSSWNPCDWPGILCSNDGRVISVNLSDNSISGEIFHNFSALTKLSHLDLSKNTLGGRIPADLRRCESLVYLNLSHNIINDELNLTGLKSLEVLDLSINRIGGEIQLTFPAVCDRLVLANISENNFTGSIDNCFDECKSLKYLDLSSNNFSGEIWQGFARLQQFSASENRFGGVVSPSIFGGVCALGLLELSKNSFGGEVPGEIANCTSLRILNLWGNHFTGPIPPELGSLSSLEGLFLGNNNFSRQVPESLLNLSSLAFLDLSKNNFGGEIQEIFGKFKQVRFLVLHTNSYTGGIYSSGILKLSNISRLDLSFNNFSGPLPVELSEMPSLEFLILAHNQFSGSIPPEFGNIRRLQALDLSFNSLNGSIPSTIGKLNSLLWLMLANNRFSGEIPPEIGNCTSLLWLNLANNQFSGKIPPELTTIGRNPFPTFEMNRKNRGIPAGSGECQVMMRWIPANYPPFSFAYTLLTRRSCRSLWDNLLKGHGLFPMCLTGSKVRTLQISGYVQISGNQFSGEVPPEIRNMQNFSLIQMAANKFYGKLPPAIGQLPVVVLNLSENNFSGEIPMEIGNLGCLQNLDLSSNNFSGTFPTSLNNLSELNKFNISYNPLISGVIPSTGQLATFEKESFLGDPLLVLPPFIGNPSNHPPPTAKSDGKPKQKFTSAFVFLTLTVAFIMCGLVSLLVCVLLKNPVDSSGYLLDDSKYRHDFASSSEVSSPWLSGAVKVIRLDKTAFTYADILMATCNFSDSRIIGKGGFGTVYRGVLPDGREVAVKKLQRDGIEGEKEFRAEMEVLSGNGLGWPHPNLVTLYGWCLNGSEKLLVYEYMEGGSLEDLISDRMRLTWRRRLDVAIDVARALVFLHHECFTAIVHRDVKASNVLLDRNGKARVTDFGLARVVDDGNSHVSTMVAGTVGYVAPEYGQTGQATTKGDVYSFGVLSMELATGRHALDGGEECLVEWARRVMGNGRQGLSRAVIPVVMLGSGLAEGAEEMRELLRIGIKCTAESPQARPNMKEVLAMLITILSTQQDFSYGSSPPSSEMSGLET* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0666 1101 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 81 190 - -
Vvi17g0666 1101 Gene3D Ribonuclease Inhibitor 169 277 IPR032675 -
Vvi17g0666 1101 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 882 1083 - -
Vvi17g0666 1101 Pfam Leucine rich repeat 81 135 IPR001611 GO:0005515
Vvi17g0666 1101 SMART LRR_typ_2 146 169 IPR003591 -
Vvi17g0666 1101 SMART LRR_typ_2 100 124 IPR003591 -
Vvi17g0666 1101 SMART LRR_typ_2 434 458 IPR003591 -
Vvi17g0666 1101 SMART LRR_typ_2 386 409 IPR003591 -
Vvi17g0666 1101 SMART LRR_typ_2 289 313 IPR003591 -
Vvi17g0666 1101 SMART LRR_typ_2 629 653 IPR003591 -
Vvi17g0666 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Vvi17g0666 1101 Pfam Protein kinase domain 803 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0666 1101 SUPERFAMILY RNI-like 220 478 - -
Vvi17g0666 1101 Gene3D Ribonuclease Inhibitor 523 704 IPR032675 -
Vvi17g0666 1101 Pfam Leucine Rich repeat 195 211 IPR001611 GO:0005515
Vvi17g0666 1101 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Vvi17g0666 1101 FunFam serine/threonine-protein kinase BRI1-like 2 763 881 - -
Vvi17g0666 1101 FunFam Putative LRR receptor-like serine/threonine-protein kinase 555 697 - -
Vvi17g0666 1101 Gene3D Ribonuclease Inhibitor 29 168 IPR032675 -
Vvi17g0666 1101 Gene3D Ribonuclease Inhibitor 278 336 IPR032675 -
Vvi17g0666 1101 SUPERFAMILY RNI-like 59 283 - -
Vvi17g0666 1101 SUPERFAMILY L domain-like 564 695 - -
Vvi17g0666 1101 CDD STKc_IRAK 808 1075 - -
Vvi17g0666 1101 SUPERFAMILY Protein kinase-like (PK-like) 789 1085 IPR011009 -
Vvi17g0666 1101 Gene3D Transferase(Phosphotransferase) domain 1 882 1089 - -
Vvi17g0666 1101 FunFam Putative LRR receptor-like serine/threonine-protein kinase 337 498 - -
Vvi17g0666 1101 SMART serkin_6 802 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0666 1101 FunFam Putative LRR receptor-like serine/threonine-protein kinase 29 170 - -
Vvi17g0666 1101 ProSiteProfiles Protein kinase domain profile. 802 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0666 1101 ProSiteProfiles Leucine-rich repeat profile. 126 147 IPR001611 GO:0005515
Vvi17g0666 1101 Gene3D Phosphorylase Kinase; domain 1 767 881 - -
Vvi17g0666 1101 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Vvi17g0666 1101 Gene3D Ribonuclease Inhibitor 337 510 IPR032675 -
Vvi17g0666 1101 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 234 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0666 Vvi-Chr17 7307383 7310795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0666 29 1078 Receptor kinase-like Gene Family AT4G39400 32.228 1.67e-153 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Vvi17g0666 Pkinase 4.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0666 - - vvi:100258690 2169.04