Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0655 ATGGGTTGTGTGAGCTCGAAACAGGCGGTGTCGGTGACGCCTGCTTTCGATGTTTCGGTTGCGTTTAGGGACAATGCGGGTTCGGGTCGGAGCCGTGGAGGTAGGGTGGTGGCCGCGGAATTCGAGAAGAAGAAAAAGAGCGGTGGTGGTGAGTCGGGGCTGAGTGGAAGCGAGTTAGGTGAGTCAGGGAGGGTGAGTTCGAATGGGGGTGGCGACTCCTTGAGCTTCAGATTGGGGAATTTGCACAAGTATGTGGAGGGAGAGCAAGTCGCCGCCGGATGGCCGGCATGGCTCAGCGCCGTCGCCGGCGAAGCCATTCAGGGTTGGGTCCCTCTCCGAGCCGATTCTTACCAGACATTGGAGAAGATCGGACAAGGTACATATAGCACTGTGTTCCGAGCTCGTGAACTAGAAACTGGGCGAGTAGTTGCTTTAAAGAAGGTGCGGTTTGACAACTTTGAGCCTGAGAGCGTTAGGTTTATGGCACGAGAAATAACGATACTCCGCAGGCTTGACCATCCAAACATTGTGAAATTGGACGGTTTGATTACTTCCCGATTATCGTGTAGCATATACCTTGTCTTCGAGTACATGGAACACGATCTTTCTGGACTCATGTCATGCCCTGACATCAAGTTCAGTGAGTCACAGGTCAAGTGTTACACGAAGCAGTTGTTATCTGGGCTTGAGCACTGTCACTCTCGTGGTGTGATGCATCGGGACATTAAAGGAGCAAATCTTCTGGTTAATAATGAAGGGATTTTGAAAATTGCTGATTTTGGGTTGGCAAACTTCTGTAGCTCTGTGTACAGGCAACCTCTAACCAGTCGCGTTGTGACTTTATGGTACCGTCCTCCTGAACTTTTGCTGGGGTCAACAGATTATGGAGCATCTGTGGATCTTTGGAGTGTTGGATGTGTGTTTGCCGAACTTCTTGTTGGTAGACCCATCCTTAAAGGGAGAACTGAGGTTGAACAATTACACAAGATTTTCAAGCTTTGTGGTTCCCCTCCAGATGAATACTGGAAAAAGTCTAAACTTCCTCATGCAACACTATTCAAACCACAGCAGCCTTATGAGAGTTGTCTTCGAGAGTCCTTTAAAGATCTCCCAACAATTTCTGTGGACCTGATAGAAACTTTGCTTTCAGTAGAACCATATAAGCGTGGGACTGCCTCCTCTGCTCTTGCATCTGAGTATTTCAAAACAAAGCCTTATGCATGTGACCCCTCGAGCTTGCCAAAATATTCACCTAACAAAGAGATTGATGCTAAAAATCGCGAGGAGTCAAGGAGGAAAAAGGTTGGTGGAAGAGTACGTGGGTCTGAAAAACCAACAAGAAAACCAAATGGAATCAACAAACTGGTACCAGCAGAGAATTTTACTGCTCAAACCCAAGGTCCCCATAAACTTAATGGAAATGGCTTTCATATTTTCAAGGAAGGAGATGGCAAGTTAGGTGGAGAGCCTCCAAAGCCCTCAATTGATGTACTGACAGAGGCTTCTCACATGAAGAATGCATCTCAAGGGGACATTCCCTTTTCTGGCCCTTTGCAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGGCGGAAAGATGATGCGTCCACAAGATCACACAGTAGGTCCAGTTCAAGAGGTCTTGGTTGTAATGCATTGGAACCTAACGCTGCATTGCATGCAAGGAATAATTCAAATAGGCTGGAAAATTCTGATGTTTCAAATGGTGGCCGCACTGATTCTAGAGGCTATGATTCATCTGAAATTGCCAAGCGTGTGATGCTAAAACAATGGGGCCAGTTTGAGCGTCCGGATTCATTTGATGCTTCTGATATGTACCACTCACAGGAACTATCACTGCCAATGTATCGAAGAGAGGAAATGGCAGCTAAGAGAAATCATTTGAGTTATCAGGATCAAGGGGAAAAGGTTGAATTTTCAGGACCCTTGTTATCTCAATCACATAGAGTTGATGAACTCTTAGAGAGACATGAACGCCATATCCGCCAAGCAGTCAGAAGATCATGGTTCCAAAGAGGCAAGAAAAATGGGAAGTAG 2061 0.4643 MGCVSSKQAVSVTPAFDVSVAFRDNAGSGRSRGGRVVAAEFEKKKKSGGGESGLSGSELGESGRVSSNGGGDSLSFRLGNLHKYVEGEQVAAGWPAWLSAVAGEAIQGWVPLRADSYQTLEKIGQGTYSTVFRARELETGRVVALKKVRFDNFEPESVRFMAREITILRRLDHPNIVKLDGLITSRLSCSIYLVFEYMEHDLSGLMSCPDIKFSESQVKCYTKQLLSGLEHCHSRGVMHRDIKGANLLVNNEGILKIADFGLANFCSSVYRQPLTSRVVTLWYRPPELLLGSTDYGASVDLWSVGCVFAELLVGRPILKGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQQPYESCLRESFKDLPTISVDLIETLLSVEPYKRGTASSALASEYFKTKPYACDPSSLPKYSPNKEIDAKNREESRRKKVGGRVRGSEKPTRKPNGINKLVPAENFTAQTQGPHKLNGNGFHIFKEGDGKLGGEPPKPSIDVLTEASHMKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDASTRSHSRSSSRGLGCNALEPNAALHARNNSNRLENSDVSNGGRTDSRGYDSSEIAKRVMLKQWGQFERPDSFDASDMYHSQELSLPMYRREEMAAKRNHLSYQDQGEKVEFSGPLLSQSHRVDELLERHERHIRQAVRRSWFQRGKKNGK* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0655 686 MobiDBLite consensus disorder prediction 42 69 - -
Vvi17g0655 686 MobiDBLite consensus disorder prediction 420 447 - -
Vvi17g0655 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vvi17g0655 686 MobiDBLite consensus disorder prediction 412 453 - -
Vvi17g0655 686 SUPERFAMILY Protein kinase-like (PK-like) 111 408 IPR011009 -
Vvi17g0655 686 Gene3D Transferase(Phosphotransferase) domain 1 200 440 - -
Vvi17g0655 686 ProSiteProfiles Protein kinase domain profile. 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0655 686 MobiDBLite consensus disorder prediction 559 583 - -
Vvi17g0655 686 Pfam Protein kinase domain 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0655 686 Gene3D Phosphorylase Kinase; domain 1 104 199 - -
Vvi17g0655 686 SMART serkin_6 117 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0655 686 FunFam probable serine/threonine-protein kinase At1g54610 104 199 - -
Vvi17g0655 686 MobiDBLite consensus disorder prediction 531 586 - -
Vvi17g0655 686 FunFam probable serine/threonine-protein kinase At1g54610 200 440 - -
Vvi17g0655 686 PANTHER CELL DIVISION PROTEIN KINASE 115 405 - -
Vvi17g0655 686 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vvi17g0655 686 CDD STKc_CDK9_like 117 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0655 Vvi-Chr17 7211134 7217743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0655 109 433 Core Cell Cycle Gene Families AT5G10270 48.094 1.74e-108 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi17g0655 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0655 - - vvi:100852764 1334.32