Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0653 ATGGCGCTGTTCAGACGGTTCTTTTATCGGAAGCCACCGGATCGGCTTCTCGAGATCTCCGAGCGAGTCTACGTATTTGATTGTTGTTTCTCCACTGACGTATTGGAAGAAGATGAATACAAAGTTTACATGGGTGGCATTGTAGCACAACTACAAGACTACTTTACTGATGCTTCTTTCATGGTGTTTAACTTTAGAGAAGGGGATAGGCGAAGCCAAATCTCAGACATATTGTCTCAGTATGACATGACAGTTATGGACTACCCTCGGCAATATGAGGGGTGTCCTCTTCTACCATTGGAGATGATCCACCATTTCTTGCGATCAAGTGAGAGTTGGTTGTCACTGGAGGGGCAACAGAATGTCTTGTTAATGCACTGTGAAAGAGGAGGATGGCCGGTGCTTGCTTTCATGCTTGCAGGTCTTTTATTATACCGAAAACAGTATAATGGGGAACAGAGAACTCTTGAAATGGTCTACAAGCAAGCTCCAAGGGAACTGCTCCATCTGTTGTCCCCTTTGAATCCACAGCCTTCCCAGTTGAGATATCTTCAGTATATTTCCAGAAGAAACTTTGGTTCAGATTGGCCTCCATCGGATACACCTCTAAAGTTGGATTATCTTATTCTTAGAATCCTTCCTCTGTTTAATGGGGGAAGGGGTTGCAGGCCGGTGGTTCGTGTTTATGGTCAGGATGCTTCAGCAATGGCAAACAGAAGTTCTAAGCTTCTGTTTTCAACTTCAAAGACAAAAAAACATGTTCGTCACTACCAACAGGCAGAGTGTACAGTAGTGAAAATAGGTATTCATTGCCGTGTTCAAGGGGATGTTGTTCTTGAATGTATCCATTTGGATGAAGATCTAGTACGTGAGGAAATGATGTTCAGAGTTATGTTCCACACAGCATTTGTCCGTTCAAATATTTTGATACTCAACCGTGATGAGATTGATGTCTTGTGGGATGTGAAGGACCAGTTCCCGAAAGACTTCAAAGCAGAGGTACTTTTTTCGGATGCCAATGCCATTGGGTCTATTTGCACCACAGAAATAGCTGGTGAAGATGTGAATGAGAATGAAAGCGCTTCGCCTGAGGAGTTTTTTGAGGTTGAGGAGATCTTCAGCAATGCTGCAGATGCACAGGAGGTGAAGGGGGACTATGATATTCATGCCGTTCAAGACATTATGATGGACGATGGAAATCATAAAGAAGTCTGGAAGGAGGATTTGGATCCTCAGGCATTTCAAGACTGTGCATCAGATGATGGGAATCACAAGTTAGATGGAAGAGTAGACTCTAATCTTCCTTCAGCAAAAGCCATTGCGTTGGGTAATAGGGATGACAAGTTAAAATCCATGGTAGTGGTCTCTGCTGTTCTTAGAAATAGAGAAACCAAGGAGGTAACTGCAGATGTGTGCCTGGATGATGGTGATAAAATATTAGATTCCCCGGTAGTAGTTGCTGATGAGCTCAAAAACATAGGAACCAAGGTAGTTGCTGCAGACTTGTCTAGCAAATCAGGAGAGATGGAGGATAATAGAGAAGACACTGCTGATGGGATCAGAAACATAGAGACCAATGTAGTGATTGCAGATGTATCTAGAAAATTAGAACTGGAGAATAAATGTGATAGAGAAGACATTACTGATGGGATCAAAGTAATAGAAACCAACTTAGTGACTGCAGATGTATCTAGCAAATTAGAAGACATAGAGAATAAATTTGATAGAGAAGGCATTGCTGATGGGGCCAAAAACATAGAAACCAACTTAGTGGCTGCAGACATATCTAGCAAATCAGAAGAGGTGGAGAATAATCGTGATAGAGAAGACATTGCTATGCAGAAGCAGATTGACAATAGGGTGCCGCAGCAAAAGTTGAATGCTGATTCTGGTAGGCAAAAGTCTGATAAATTACTGCCACCTGCACCCAGGAAACAGCCTGCTTCAACTGCAAAACCACCAGCTGCAGAGTCAGTCATAGCCAAGCAAAAAGTTAAACAGCAAGAACCTCAGAGTGCTGCTGCAAAACCTACAAAGCAAAAACCATTGGTATCTCGATGGATTCCTCCTAATAAAGGCTCCTACACTAATTCCATGCATATTTCATATCCACCATCAAGGTATAATAGTGCACCAGCTGCTCTAGTCATCACTGCTCTTTCAAAGGATTCTAATGCTGATGGCAATCTAGAGCTTGTTGGATTTGGAGTCCCTTCTCCCCCTCCCCCTCCTCCTCTACCTTCCATGCGAGGTGGGCCACCTCCTCCTCCACCACCCCCTGTCCTTGGAGTTCCCCCACCACCTCCTCCTCCTCCCTTGCGTGGAGGTCCACCTGCACCACCCCCGCCTCCTTCACGTGGAGGTCCACCTCCACCACCCCCACCTCCTTCTCGTGGAGGTCCACCTCCACCACCTCCGCCTCCTTTACATGGAGCTCCACCTCCTCCACCACCTCCTCCCAGAAGTGGGGTGCCTCCTCCACCACCTCCCCCTATGCGTGGAGCACCGCCTCCGCCACCTCCTCCAATGCGTGGAGCACCACCTCCTCCACCACCTCCAATGGGAAGAGCACCGCCTCCGCCGCCACCTCCAATGCGAGGAGCACCACCTCCCCCATTTGGTGGAGCACCACCTCCTCCGCCACCTCCTACTGGTAGAGGCCCACCTCCACCACCTCCTCCTGGAGGTCGTGCACCTGGTCCTCCTGCACCACCTCGGCCTCCAGGTGGTGGACCTCCTCCACCTCCACCCTTTGGTGCCAAAGGATCAAATTCACTTGGATCATCGACTGATGCAAGAGGCTTGCCTTCTGGAAGAGGGAGAGGGCTTTCACGCCCTTTGGGTCCTACAGCACCTCGTAGATCTTCCTTAAAGCCATTGCACTGGAGCAAGGTAACAAGGGCATTGCAAGGAAGCTTATGGGAGGAGTTGCAAAGATATGGAGAGCCTCAAATTGCGCCAGAATTTGATGTCTCAGAGTTGGAGACTCTTTTCTCCGCCACAGTCCCAAATTCGGCTAATAGCTTAGGAGGTAAATCCGGTGGGAGGCGCAAGTCTGTTGGATCTAAAGCTGACAGAGTCAACCTGATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGGCAGTAGCTGTTGTTTACTGTTGTACATATTCTCAGGCTGCAGTTCTAGCAATGGATGAGTCAATTTTAGATGTTGATCAAGTGGAAAATCTCATAAAGTTCTGCCCTACTAAAGAGGAGATGGAACTTCTTAAGGCCTATACTGGTGATAAGGAGGCCCTGGGAAAGTGTGAACAGTTCTTTCTGGAGCTGATGAAAGTGCCCCGTGTGGAGTCTAAATTAAGAGTATTTTCCTTCAAGATTCAATTTGGATCTCAGATTTCAGATTTTAGAAAAAGTTTGAACACTGTAAACTCTGCATGTGAAGAGGTTCGCAATTCGGTGAAATTGAAGGAAATCATGAAGAAAATTCTTTACCTCGGGAATACATTGAACCAAGGAACTGCAAGGGGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGGTGCTTGCCTCTAAGTCACCAGGACTTCTAGATTTCCATGAGGATCTTGTTAGCCTGGAGGCTGCATCAAAGATACAATTGAAATCTTTAGCAGAAGAAATGCAGGCTATAATGAAGGGGTTGGAAAAGGTCAAGCAGGAGCTGAATGCATCTGAAAATGATGGTCCTGTATCGGATATTTTTCGTAAGACATTGAAAGAGTTCATTGGTGTTGCTGAGGGACAGGTGGGGTCTGTGACAAATCTATATTCTGTGGTGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGTCCGCTGCCCATTTGA 3960 0.4611 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYMGGIVAQLQDYFTDASFMVFNFREGDRRSQISDILSQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQRTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYISRRNFGSDWPPSDTPLKLDYLILRILPLFNGGRGCRPVVRVYGQDASAMANRSSKLLFSTSKTKKHVRHYQQAECTVVKIGIHCRVQGDVVLECIHLDEDLVREEMMFRVMFHTAFVRSNILILNRDEIDVLWDVKDQFPKDFKAEVLFSDANAIGSICTTEIAGEDVNENESASPEEFFEVEEIFSNAADAQEVKGDYDIHAVQDIMMDDGNHKEVWKEDLDPQAFQDCASDDGNHKLDGRVDSNLPSAKAIALGNRDDKLKSMVVVSAVLRNRETKEVTADVCLDDGDKILDSPVVVADELKNIGTKVVAADLSSKSGEMEDNREDTADGIRNIETNVVIADVSRKLELENKCDREDITDGIKVIETNLVTADVSSKLEDIENKFDREGIADGAKNIETNLVAADISSKSEEVENNRDREDIAMQKQIDNRVPQQKLNADSGRQKSDKLLPPAPRKQPASTAKPPAAESVIAKQKVKQQEPQSAAAKPTKQKPLVSRWIPPNKGSYTNSMHISYPPSRYNSAPAALVITALSKDSNADGNLELVGFGVPSPPPPPPLPSMRGGPPPPPPPPVLGVPPPPPPPPLRGGPPAPPPPPSRGGPPPPPPPPSRGGPPPPPPPPLHGAPPPPPPPPRSGVPPPPPPPMRGAPPPPPPPMRGAPPPPPPPMGRAPPPPPPPMRGAPPPPFGGAPPPPPPPTGRGPPPPPPPGGRAPGPPAPPRPPGGGPPPPPPFGAKGSNSLGSSTDARGLPSGRGRGLSRPLGPTAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPEFDVSELETLFSATVPNSANSLGGKSGGRRKSVGSKADRVNLIDLRRANNTEIMLTKVKMPLSDMMAVAVVYCCTYSQAAVLAMDESILDVDQVENLIKFCPTKEEMELLKAYTGDKEALGKCEQFFLELMKVPRVESKLRVFSFKIQFGSQISDFRKSLNTVNSACEEVRNSVKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLASKSPGLLDFHEDLVSLEAASKIQLKSLAEEMQAIMKGLEKVKQELNASENDGPVSDIFRKTLKEFIGVAEGQVGSVTNLYSVVKCRCTCTIFWRGSCPLPI* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0653 1319 SMART PTEN_C2_2 198 338 IPR014020 -
Vvi17g0653 1319 Coils Coil 1242 1269 - -
Vvi17g0653 1319 MobiDBLite consensus disorder prediction 726 959 - -
Vvi17g0653 1319 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Vvi17g0653 1319 MobiDBLite consensus disorder prediction 599 615 - -
Vvi17g0653 1319 MobiDBLite consensus disorder prediction 597 698 - -
Vvi17g0653 1319 Gene3D Protein tyrosine phosphatase superfamily 14 203 IPR029021 -
Vvi17g0653 1319 ProSiteProfiles Formin homology-2 (FH2) domain profile. 947 1319 IPR015425 -
Vvi17g0653 1319 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1026 1301 - -
Vvi17g0653 1319 PANTHER FORMIN-J 1 798 - -
Vvi17g0653 1319 Gene3D Formin, FH2 domain 948 1310 IPR042201 -
Vvi17g0653 1319 MobiDBLite consensus disorder prediction 736 920 - -
Vvi17g0653 1319 SMART it6_source 736 1318 IPR015425 -
Vvi17g0653 1319 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Vvi17g0653 1319 Gene3D - 204 337 - -
Vvi17g0653 1319 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Vvi17g0653 1319 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Vvi17g0653 1319 Pfam Formin Homology 2 Domain 952 1302 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0653 Vvi-Chr17 7166291 7182853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0653 1 454 FH2 protein (formin) Gene Family AT5G07740 71.488 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0653 - - vvi:109124306 1447.57