Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0651 ATGGGCGTGTCGGGTCTTGACCTCTCGACCCTCACCTCAGGCCTTGCTATTGCTTACTATAAGGATTTTGTGCTCAATGCCACAGCCATCACAAATGGTTCCATAATGGTTCAGGTTGGCCCGGCTTCTAACCTTGGTTCAGGCCAATCAAATGCCATTCTTAATGGCTTGGAAGTCATGAAGATGAGTAACATGGCAGGAAGCTTGGACGGCTTATTCAATGTTGATGAGTCATTCAAGGGGAGTTCAGGATCAAAGAAAATGAAGATTCTTGCAGCTGTCGGTTTGATCATGGCCATAACAGCAATGCTGTTGCTTGGAATGGTTTTTTTTCGGTGGCAGAAGAGGCCAAAAGACTGGGAGAAGAAAAACAGCTTCTCATCATGGCTTCTACCTCTACATGCCGGCCAGTCTAGTTTCCTGTCCAGCAAGAGTGGATCCCAGAGATCAAATTTGTATGGCTCTCACAAGAGCAAGAGTGGTTACTCTAGCTTTTTGTCCTCCGGACTTGGTCTTGGTCGGTTATTCTCTTTTGCCGAGCTTCAAGATGCGACCCGTAATTTTGATGAGAAGGCAGTGATCGGTGTTGGTGGATTTGGGAAGGTGTATCTTGGGGAGTTGGAAGATGGAACCAAGCTTGCCATTAAGCGAGGAAATGCCAATTCAGAGCAAGGTATAAATGAATTTCAAACAGAAATACAAATGCTGTCAAAGCTCCGGCATCGCCACCTTGTTTCACTTATTGGGTACTGTGATGAACAATCGGAGATGATCCTCGTTTATGAATACATGGCTAATGGCCCGCTTCGTGACCACATCTATGGTTCAAACCTGCCCCATCTCTCTTGGAAACAACGGCTGGACATCTGCATTGGTGCTGCTCGGGGGCTGCATTATCTCCACACTGGTGCGGCACAAGGCATAATCCACCGGGATGTGAAGACCACCAACATTCTTCTGGATGACAACTTTGTCGCAAAAGTTTCGGATTTTGGCCTCTCAAAAGCTGCTCCCACATTGGAACAAACCCATGTGAGCACAGCCGTGAAAGGCAGTTTTGGATATCTTGATCCGGAGTACTTCAGGAGGCAGCAGCTCACAGAAAAATCGGATGTTTACTCTTTTGGGGTTGTCCTTTTTGAGGTGTTGTGTGCTAGGCCTGCTATAAACCCAGCACTGCCAAGGGAGCAGGTTAATTTGGCTGAGTGGGCAATGCAGTGGAACAGGAAGGGCATGATAGAGAAGATAGTTGATCCTCATATTGCCGGCACTGTCAGCTCGGGATCTCTGAAGAAGTACGTGGAAGCAGCAGAGAAGTGTTTGGCAGAACATGGGGTGGATCGGCCCTCTATGGGAGATGTATTGTGGAACTTGGAGTATGCTTTGCAGATGCAGGAGGCATCCTCACTAATTGATCCTCTGGATAGCAGTGCAAAGCTTATTACTTTGGAACCAGGCAAGGAGGAGCCTAAAGGGGCTGCATCAACCCCAGTCAGTGATGATTCTGAAGTAACAGTAGGGTCTCCCGTATTTTCTCAGACTGGGTTTCAGGGAAGGTAA 1560 0.4763 MGVSGLDLSTLTSGLAIAYYKDFVLNATAITNGSIMVQVGPASNLGSGQSNAILNGLEVMKMSNMAGSLDGLFNVDESFKGSSGSKKMKILAAVGLIMAITAMLLLGMVFFRWQKRPKDWEKKNSFSSWLLPLHAGQSSFLSSKSGSQRSNLYGSHKSKSGYSSFLSSGLGLGRLFSFAELQDATRNFDEKAVIGVGGFGKVYLGELEDGTKLAIKRGNANSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPLRDHIYGSNLPHLSWKQRLDICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDDNFVAKVSDFGLSKAAPTLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPAINPALPREQVNLAEWAMQWNRKGMIEKIVDPHIAGTVSSGSLKKYVEAAEKCLAEHGVDRPSMGDVLWNLEYALQMQEASSLIDPLDSSAKLITLEPGKEEPKGAASTPVSDDSEVTVGSPVFSQTGFQGR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0651 519 FunFam receptor-like protein kinase FERONIA 150 263 - -
Vvi17g0651 519 MobiDBLite consensus disorder prediction 498 519 - -
Vvi17g0651 519 PANTHER OS07G0166700 PROTEIN 174 465 IPR045272 GO:0004714|GO:0006468
Vvi17g0651 519 SMART serkin_6 188 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0651 519 MobiDBLite consensus disorder prediction 483 519 - -
Vvi17g0651 519 SUPERFAMILY Protein kinase-like (PK-like) 169 459 IPR011009 -
Vvi17g0651 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Vvi17g0651 519 FunFam Receptor-like protein kinase FERONIA 264 477 - -
Vvi17g0651 519 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Vvi17g0651 519 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524
Vvi17g0651 519 ProSiteProfiles Protein kinase domain profile. 188 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g0651 519 CDD STKc_IRAK 194 459 - -
Vvi17g0651 519 Pfam Protein tyrosine and serine/threonine kinase 192 404 IPR001245 GO:0004672|GO:0006468
Vvi17g0651 519 Gene3D Phosphorylase Kinase; domain 1 151 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0651 Vvi-Chr17 7153946 7155505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0651 2 497 Receptor kinase-like Gene Family AT5G61350 70.646 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi17g0651 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0651 - - vvi:100258753 967.992