Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0650 ATGTCTGCTGGTGCTTCCTCTTCTGGTTTGCCTTCCGACGATTTCAACGATGTCGAGGACTTCAATTGGGTCAATGAAGGCGAGGGACTATCGAAGCGGGACCGATATCCTGAGTTGTTGGATCTCGTAAAGAAGGGCAATCGTGCGTTCCGAGAAAATCGAATGGAGGAGGCGATCAATTGTTACACAAAAGCCAGTAACATCCAGCCAAATGATGCTGTTATCCTCAGCAACCGATGTGCTGCTTATATCAGGATTAGCGACTTTCTTAAACAAAGAACTCCGACAGATTCTGAATATAGACCATTGAATGGGCTGGATCCTACCATACACGCTGAACTTGCTTTAAAGGATGCCACAAGGTTGGTGGACTTACGAAGTAATTCAGTAAAACCATACATCTTCAAGGCTAATGCTCTCATTTTGTTGGAAAAATATGATCTGGCTCGAGAAGCTATTCTTTCAGGCCTTCAGGTTGACCCTCTAAGCAATGCTCTTCAGGTTTCCCTTCAGAAGTTGGAGAAAGCAACAGCCAGTCTAAACCACAGAGGCCGTGGGAAGCCAGAACGTAGTGATGACTTTGATTGTACACTTTGCCTTAAGTTATTATTTGAACCTGTAACAACTGCTTGTGGCCATTCTTTTTGTCGCTCTTGCCTATTTCAGGCAATGGACTGTAGTAATAAATGTCCACTATGCCGAATGGTTCTTTTTATCAATCCTAAAACATGTTCAATCAGTGTTACATTGAACAATATAATACAGAGGAACTTTCCAGAGGAATATGCTGAAAGGAAGTCAGAGCATGAAAGTTTAACAAACTTCGGCTTTGATCTGCTGCCTCTTTTTGTCATGGATGTTGTTCTCCCATGTCAGAAGGTTCTCTTAAACATATTTGAACCCCGCTACAGACTTATGGTTAGGAGGATAATGGAAGGAAATCACCGGATGGGAATGGTTATCATTGATTCTACAACAGGTGTCCCAGCTGAGTTTGGTTGTGAAGTGGAGATTACTGAATGTGATCCACTTCCAGACGGACGTTTCTATCTAGAGGTTGAAGGTAGGCGAAGATTTCGCATAATCAATTGTTGGGATCAAGATGGGTATCGAGTTGCTGCAGTTGAATGGGTTCAGGATATTCTTCCACCTGATAGGACAAAAGAACAAGTAGATTTACAGGAAATGTCAAGTAATGCAGCTAAGTATGCTCGGTTGTGGATAAAGAGGGCAAAAGAAGCAGCATGGCAAGATAGAAGACGACTTGCTGAACTCTGTCATGCTGAAGCGATGATGCCCACACCACAGGATCCTGAGCTCTTCAGTTTTTGGCTTGCTGGTCTATCAAACCGGAGGCCACCAGAAAGATTGGATCTCCTGTATATACGAGACACAAAAGAGAGGATAAGGCGTGGACTCATTTATATGAGAGATGCAGAACAGGGCTGTCAAGTGCAATGA 1461 0.4333 MSAGASSSGLPSDDFNDVEDFNWVNEGEGLSKRDRYPELLDLVKKGNRAFRENRMEEAINCYTKASNIQPNDAVILSNRCAAYIRISDFLKQRTPTDSEYRPLNGLDPTIHAELALKDATRLVDLRSNSVKPYIFKANALILLEKYDLAREAILSGLQVDPLSNALQVSLQKLEKATASLNHRGRGKPERSDDFDCTLCLKLLFEPVTTACGHSFCRSCLFQAMDCSNKCPLCRMVLFINPKTCSISVTLNNIIQRNFPEEYAERKSEHESLTNFGFDLLPLFVMDVVLPCQKVLLNIFEPRYRLMVRRIMEGNHRMGMVIIDSTTGVPAEFGCEVEITECDPLPDGRFYLEVEGRRRFRIINCWDQDGYRVAAVEWVQDILPPDRTKEQVDLQEMSSNAAKYARLWIKRAKEAAWQDRRRLAELCHAEAMMPTPQDPELFSFWLAGLSNRRPPERLDLLYIRDTKERIRRGLIYMRDAEQGCQVQ* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0650 486 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Vvi17g0650 486 ProSiteProfiles Zinc finger RING-type profile. 196 234 IPR001841 -
Vvi17g0650 486 PANTHER RING FINGER PROTEIN 127 34 479 - -
Vvi17g0650 486 SMART ring_2 196 233 IPR001841 -
Vvi17g0650 486 SUPERFAMILY TPR-like 42 182 IPR011990 GO:0005515
Vvi17g0650 486 CDD RING-HC_LONFs_rpt2 193 237 - -
Vvi17g0650 486 SMART lon_5 279 478 IPR003111 -
Vvi17g0650 486 ProSiteProfiles Lon N-terminal domain profile. 277 478 IPR003111 -
Vvi17g0650 486 Gene3D - 279 380 IPR046336 -
Vvi17g0650 486 Gene3D Tetratricopeptide repeat domain 33 187 IPR011990 GO:0005515
Vvi17g0650 486 SMART tpr_5 39 72 IPR019734 GO:0005515
Vvi17g0650 486 SMART tpr_5 130 163 IPR019734 GO:0005515
Vvi17g0650 486 SUPERFAMILY RING/U-box 189 258 - -
Vvi17g0650 486 Gene3D - 418 478 - -
Vvi17g0650 486 Pfam Zinc finger, C3HC4 type (RING finger) 196 233 - -
Vvi17g0650 486 SUPERFAMILY PUA domain-like 280 476 IPR015947 -
Vvi17g0650 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 280 477 IPR003111 -
Vvi17g0650 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
Vvi17g0650 486 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0650 189 237 C3H Transcription Factor Family AT1G74990 40.385 3.89e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0650 - - vvi:100258753 991.104