Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0646 ATGGAGATGGCGCGGAATGAGATTGGCAGCGGCGGAAGTAACAGTAAGAGCAGTGATTCCTTTATCGATCGAAGCAACGTGCGGATTTTGTTGTGCGACAACGATACCAAGAGTTCGGACGAGATCTTCACTCTTCTCTGCGGGTGCTCCTATCAAGTAACATCAGTGAGGTCAGCTAGACAGGTGATTGATGCATTGAATGCTGAGGGACATGATATTGATATCATACTCGCTGAAGTTGACCTTCCAATGACCAAAGGCATGAAGATGTTAAAGTACATTATGCGGGATAAGGAGTTGCGACGCATACCCATTATCATGATGTCTGCACAGGACGAGGTTTCTGTTGTTGTGAAGTGCTTGAGACTTGGTGCAGCTGACTACCTTGTAAAGCCTTTGCGCACAAATGAACTATTGAACTTGTGGACTCACATGTGGAGAAGGCGGCGAATGCTTGGACTTGCAGAGAAGAACATCTTGAATTATGATTTTGATGTGGCAGCTTCAGACCCTAGTGATGCTAATACAAACAGTACTATGTTCTCGGATGACACGGATGACAAGTCACGGATGAGTGCCAATCCAGAGATGGTTGTTTCAGTTCATCAGGAAGATGAGTCTAATGCTACTATTGATAGCACTGATGTTGCTGCTGAGCCTCCAGTTGTGAATCAGTTGGAATGTCGGCCTGATGTTCCAGGAATTAGTGACAGGCGAACAGGACAACTTCTTTCAGGCCCAAAAAAGAGTGAACTGAAGGTTGGTGAGTCTTCTGCCTTCTTTACATATGTCAAATCAAGCATGATTAAAACCAATTCTCAAGGGATTCCCAACATCAATGAAAGTGCTCCTCAACATTCAAGGATGGAAGAGAGAGTTCAAGCATGGAGTGAAAAGGGGGTTAATGATACCCAAGAACATGAAAATGGAGAGGCATGGGAAAACTATTCACAAGGAGATGACTTTCCAAGCAGTAACAGCATCCCTGATTCTCTTTCTGTGGAGATGTCTTGTACCCCTCCTGCACCAATCGAATTTGTACAAGGAAGGAACTCGAAGGGAGAAGAGTTCTCTCAGGTGCCAATTCATCCAAGAAATGAACATCAAGTTGATATTTCAGGGTTTCCGGGGCACACTGCTTACCCATATTGTATGTCAGGAGTGATGAATCAAGTGATGATGCCATCATCTGCACAGCTGTATCCGAAGAGCCTGCATGACATGCAAAATAATGCTACTACTTCTGCCATGCTACCTCAGTACAATCATCTTCCACAATGTCCTCCCCATGTGCCTGGAGTTGCATCATTTCCTTATTATCCAGTTAGTATATGCCTGCAACCAGGTCAAATGTCCACTACACACCCCTGGCCATCATATGGAAATTCATCTTCCACTGAAGTGAAATTAGGTAAAGTAGATAGAAGAGAGGCTGCCTTGATAAAGTTTAGGCAGAAAAGGAAGGAGCGTTGTTTTGACAAGAAAATTAGATATGTGAACAGAAAACGACTTGCTGAAAGGAGGCCACGTGTGAGAGGACAGTTTGTGAGGAAAATGAATGGTGTAAATGTGGATCTTAATGGGCGACCTGCTTCTGTTGATTTTGATGAGGATGAAGAGGAGTATGAGGAGGAGAATGCATCAAGGGATTCTACTCCTTGA 1662 0.441 MEMARNEIGSGGSNSKSSDSFIDRSNVRILLCDNDTKSSDEIFTLLCGCSYQVTSVRSARQVIDALNAEGHDIDIILAEVDLPMTKGMKMLKYIMRDKELRRIPIIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLAEKNILNYDFDVAASDPSDANTNSTMFSDDTDDKSRMSANPEMVVSVHQEDESNATIDSTDVAAEPPVVNQLECRPDVPGISDRRTGQLLSGPKKSELKVGESSAFFTYVKSSMIKTNSQGIPNINESAPQHSRMEERVQAWSEKGVNDTQEHENGEAWENYSQGDDFPSSNSIPDSLSVEMSCTPPAPIEFVQGRNSKGEEFSQVPIHPRNEHQVDISGFPGHTAYPYCMSGVMNQVMMPSSAQLYPKSLHDMQNNATTSAMLPQYNHLPQCPPHVPGVASFPYYPVSICLQPGQMSTTHPWPSYGNSSSTEVKLGKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKMNGVNVDLNGRPASVDFDEDEEEYEEENASRDSTP* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0646 553 ProSiteProfiles CCT domain profile. 476 518 IPR010402 GO:0005515
Vvi17g0646 553 MobiDBLite consensus disorder prediction 230 249 - -
Vvi17g0646 553 Pfam Response regulator receiver domain 29 140 IPR001789 GO:0000160
Vvi17g0646 553 Gene3D - 27 227 - -
Vvi17g0646 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 235 IPR045279 GO:0009736
Vvi17g0646 553 SMART REC_2 27 142 IPR001789 GO:0000160
Vvi17g0646 553 ProSiteProfiles Response regulatory domain profile. 28 146 IPR001789 GO:0000160
Vvi17g0646 553 Pfam CCT motif 476 518 IPR010402 GO:0005515
Vvi17g0646 553 SUPERFAMILY CheY-like 22 152 IPR011006 -
Vvi17g0646 553 MobiDBLite consensus disorder prediction 527 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0646 Vvi-Chr17 7101672 7107338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0646 16 553 Response Regulator Gene Family AT5G61380 51.118 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Vvi17g0646 Response_reg 3.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0646 K12127 - vvi:100258790 1088.56