Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0641 ATGGACAAAGGGAAACAGATTGTTACTGGCAAAAGCGATGCTGGTGTCAGTGGCAGTACTAATAAAAAGATTCGTGCTCTTATCGATAGGAGCAAACTGAGGATTTTGCTGTGTGATACAAATGCTGGGAGTTGTAAAGAAGTTGCCTCACTTCTTAAGGAATGCTCTTATCAGGGCTCAACTGGAGAGGCAATCCATGTCCTCAGCTCTGAGGGACCAAGTATTGACATTGTGCTTGCTGAACTTGATCTCCCAATGGCCAACTGCCTGAAGATGTTGAAGTACATTACTGAAGATCAAGAGCTGCGATGCATTCCTGTGATCATGTTGGTCACAGAGGACAAGATCTCAATGATTGCCAACTGCTTGCGGTACGGAGCAGTAGACTATCTGTTAACGCCTTTAGGCATCAATGAGTTACTGAATTTGTCAATTCATATGGAGAGCAAGGCACACGCTCCGACTTCCAGAGAAGAATGA 480 0.4458 MDKGKQIVTGKSDAGVSGSTNKKIRALIDRSKLRILLCDTNAGSCKEVASLLKECSYQGSTGEAIHVLSSEGPSIDIVLAELDLPMANCLKMLKYITEDQELRCIPVIMLVTEDKISMIANCLRYGAVDYLLTPLGINELLNLSIHMESKAHAPTSREE* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0641 159 Gene3D - 21 157 - -
Vvi17g0641 159 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 148 IPR045279 GO:0009736
Vvi17g0641 159 Pfam Response regulator receiver domain 35 142 IPR001789 GO:0000160
Vvi17g0641 159 ProSiteProfiles Response regulatory domain profile. 34 148 IPR001789 GO:0000160
Vvi17g0641 159 SMART REC_2 33 144 IPR001789 GO:0000160
Vvi17g0641 159 SUPERFAMILY CheY-like 28 143 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0641 Vvi-Chr17 7067496 7068399 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0641 26 147 Response Regulator Gene Family AT5G61380 54.762 1.17e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi17g0641 Response_reg 3.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0641 K12127 - vvi:100255408 307.76