Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0635 ATGGAACATGGGGGTTTTGAAGAAGGAGGTGAGATTAGGGTTTATCATTATATTCCCAGATTGATCGCTGGCGCCCTTTCCGGCGCTCTCACCGGTGTTTTTGCTCTCGCTGGTGCTTTCACGGGGGCTATCACTGGTGCTATAGCAGGTAGAGCTTCTGACAGTGGTGTCCTCCGTGGAGCTGGACTTGGTGCCATTGCTGGGGCTGTTTTGTCTGTTGAGGTTTTGGAGGCTTCCCGTGCTTACTGGTGTTCAGACCGATCCAACTCACAGAACTCCTTATCTATTACAGATTTCATAGAGGAGCTTCTCCGTGGGAGAATTGTAGAGGAATCGTTCACACCAGCAGTGTTAACTACTTACCGATGGCAGGTTAGCATTGGTAACTTAAGCTATGATGAGATGTATGATGTCTATGGTGAAGTTGCATCCAGGGGTCTGTCAGGGGACTCACTGAAGAAACTACCATGCCATGTAATCTTGGATGAAATTAAGGCAGCACAGAGCAACTGCTGCACAATATGTTTGCAGGATATTGAAGTTGGGGAAATTGCAAGGAGCTTGCCTTGGTGCCATCACACATTTCACTTGGCATGTGTGGACAAGTGGCTTATAAGACATGGCACGTGCCCTGTGTGCAGGCGCAATGTTTGA 654 0.4832 MEHGGFEEGGEIRVYHYIPRLIAGALSGALTGVFALAGAFTGAITGAIAGRASDSGVLRGAGLGAIAGAVLSVEVLEASRAYWCSDRSNSQNSLSITDFIEELLRGRIVEESFTPAVLTTYRWQVSIGNLSYDEMYDVYGEVASRGLSGDSLKKLPCHVILDEIKAAQSNCCTICLQDIEVGEIARSLPWCHHTFHLACVDKWLIRHGTCPVCRRNV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0635 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
Vvi17g0635 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 216 IPR044523 -
Vvi17g0635 217 SUPERFAMILY RING/U-box 160 217 - -
Vvi17g0635 217 SMART ring_2 172 213 IPR001841 -
Vvi17g0635 217 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
Vvi17g0635 217 Pfam Ring finger domain 171 214 IPR001841 -
Vvi17g0635 217 CDD RING-H2_NIPL1-like 171 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0635 Vvi-Chr17 7046111 7050149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0635 18 217 C3H Transcription Factor Family AT1G74410 62.500 1.79e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0635 - - vvi:100245106 408.683