Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0630 ATGGGAGGATCTCCCTGCTGCGACACCACCTCCTTGAAACGTGGCCCTTGGACGCCTGAAGAAGACCGGAAGCTCCTAGCCTACATCCAAGAACACGGCCATGGGAGCTGGCGGTGCGTGCCCGAGAATGCTGGTCTTCAAAGGTGTGGGAAGAGCTGCAGACTGAGATGGACGAACTACCTCAGACCTGATATCAAGAGAGGCAAATTCAGCTTACGGGAAGAGCAGACCATTATTCAACTTCATGCTCTTCTAGGCAACAGGTGGTCAGCTATAGCAACCCACTTACCAAATAGAACAGACAATGAGATCAAGAATTATTGGAACACACATCTCAAGAAAAGGTTGGCCAAGATGGGAATAGACCCTGTAACTCATAAGCCCAGCCATGCCGTTCTAACCTCCCCTAATGGTGACTCAAAGAACGCAGCTAACCTCAGCCACATGGCTCAGTGGGAGAGCGCCCGGCTCGAAGCCGAAGCCAGGCTGGTCAAAGATTCAAAACTCCGCCAAACTCAGCATGCCTCTGCTTCTGCTCCTGCTCCGGCTCAGCTGCTTAACAAAATGGCTACTAGGCTTACACCTCCGCGTCGTCTTGACGTACTAAATGCATGGGAAAATGTGGGATCAAAATTGAAGATTGGCAGCAGCGGTAGTAACCGTGATATCCCATCACCAACCTCAACGTTGAGCTTCCTGGAAAACGTTTCAACAATTTCAAGAGTGGAATCCTCTGAAATCACTGGAATTTTGGGCACGTTAGGGACTGAAATCGACGCGTTTGGGACACAACAATGTGACATCAATATGACATGGACCATGGAATCTACTGATGAAAATGCGAATTTCGTTCATCTTCTTCTTAGTAGGTCTGGTGACGGCATCCTCACCAACGGTGGAAGAGATGGTGAAGAACTTGAAGACAACAAGAATTATTGGAATGACATTATGAATTTGATGACCTGCCAACCATCCCGTTCGCCCAACCTCTAA 993 0.4874 MGGSPCCDTTSLKRGPWTPEEDRKLLAYIQEHGHGSWRCVPENAGLQRCGKSCRLRWTNYLRPDIKRGKFSLREEQTIIQLHALLGNRWSAIATHLPNRTDNEIKNYWNTHLKKRLAKMGIDPVTHKPSHAVLTSPNGDSKNAANLSHMAQWESARLEAEARLVKDSKLRQTQHASASAPAPAQLLNKMATRLTPPRRLDVLNAWENVGSKLKIGSSGSNRDIPSPTSTLSFLENVSTISRVESSEITGILGTLGTEIDAFGTQQCDINMTWTMESTDENANFVHLLLSRSGDGILTNGGRDGEELEDNKNYWNDIMNLMTCQPSRSPNL* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0630 330 CDD SANT 69 112 IPR001005 -
Vvi17g0630 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi17g0630 330 CDD SANT 16 61 IPR001005 -
Vvi17g0630 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi17g0630 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi17g0630 330 FunFam MYB-related transcription factor 13 66 - -
Vvi17g0630 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi17g0630 330 Gene3D - 14 66 - -
Vvi17g0630 330 FunFam MYB transcription factor 68 129 - -
Vvi17g0630 330 SMART sant 13 63 IPR001005 -
Vvi17g0630 330 SMART sant 66 114 IPR001005 -
Vvi17g0630 330 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi17g0630 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi17g0630 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi17g0630 330 Gene3D - 69 116 - -
Vvi17g0630 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0630 Vvi-Chr17 6993893 6995184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0630 1 236 MYB Transcription Factor Family AT3G01140 64.609 8.16e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi17g0630 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0630 K09422 - vvi:104882307 669.077