Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0629 ATGGAAAACATTGCTGGACTTAGTGTGGAAGATGATCAGATGATTTTGCCTCCGGGATTTCGATTTCATCCCACGGATGAGGAGCTTATCACTCACTATTTATCCAAAAAGGTTATTGATTCCAACTTCAGTGCTAGAGCTATTGGACAGGTGAATTTGAACAACTCCGAGCCTTGGGAGTTGCCTGGGAAAGCGAAAATGGGAGAAAAGGAGTGGTACTTTTTCTGTGTCAGAGACAGGAAATACCCTACTGGTCTGAGGACAAACAGGGCTACTGAGGCTGGCTACTGGAAAGCCACAGGGAAGGACAAGGAGATTTTCAGAGGAAAATCTCTGGTCGGAATGAAGAAAACCCTGGTCTTCTACGCGGGGAGGGCTCCAAAGGGAGAGAAAACCAATTGGGTGATGCACGAATACAGATTGGAGGGTAAATTCTCTCTCCATAACCTCCCTCAAACAGCAAAGAATGAATGGGTGATTTGCAGGGTATTCCAAAAGAGTTCCGGTGGGAAGAAAACCCATATTTCAGGGATAGGGAGATTAAGCTCTTATGGAAATGAATTGAATCCTTCTGTTCTGCCACCGCTAATGGATGCTTCGGCAGCTTACAACCCCAGGACCAGACCTGCCACTTCGCAATCACCTCACGTGCCCTGCTTCTCCAACCCCATCGATGTTCCCAGAAACCAAGAAGACATATTCGACTGCTTCAACAATCCTCTCCTTGCCATTTCCTCCAACCCTTCTGACATTTTCCAAAGATTCCACCTCCCAAACCCCTTTTACTCATCTCATGCTGCCACAATTCCAGGAACTCTGCAATACCCCACTTCCTTCCTAATGCAAGACCAGCCAAGCCTAAGGGCTTTACTGGAGAACCATGGATCAAACATGAGGCAGAGCCAGAAACTAGAGAGGGAGATGATCAGCGTCTCCCAGGAGACTGGCTTGAGCACTGATATCAACACTGAGATCTCCTCCGTGGTGTCCAATCTGGAATTGGGGAAGAGACCATTCGAAGATCAACACGTCCCATCTACTTCAGTCGGACCTGTTGACCTTGATCCCCTTTGGAACTACTGA 1083 0.4755 MENIAGLSVEDDQMILPPGFRFHPTDEELITHYLSKKVIDSNFSARAIGQVNLNNSEPWELPGKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYAGRAPKGEKTNWVMHEYRLEGKFSLHNLPQTAKNEWVICRVFQKSSGGKKTHISGIGRLSSYGNELNPSVLPPLMDASAAYNPRTRPATSQSPHVPCFSNPIDVPRNQEDIFDCFNNPLLAISSNPSDIFQRFHLPNPFYSSHAATIPGTLQYPTSFLMQDQPSLRALLENHGSNMRQSQKLEREMISVSQETGLSTDINTEISSVVSNLELGKRPFEDQHVPSTSVGPVDLDPLWNY* 361
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0629 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 274 - -
Vvi17g0629 360 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Vvi17g0629 360 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Vvi17g0629 360 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vvi17g0629 360 FunFam NAC domain-containing protein 100-like 25 170 - -
Vvi17g0629 360 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Vvi17g0629 360 MobiDBLite consensus disorder prediction 203 222 - -
Vvi17g0629 360 MobiDBLite consensus disorder prediction 205 219 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi17g0629 Vvi-Chr17 6977656 6978952 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0629 14 360 NAC Transcription Factor Family AT5G07680 60.807 9.18e-138 392
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi17g0629 NAM 1.3e-39 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0629 - - vvi:100251801 744.962