Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0624 ATGGCCACTGTCACCACCCAAGCTTCCGCCGCCGTCTTCCGGCCATGCGCCTCCAAATCGAGGTTCCTCACTGGGTCCTCCGGTAAACTGGGTCGAGAAGTATCTGTAAAACCCATGACCTCTTCGTCATACAGGTCCTTCAAGGTGGAGGCCAAGAAAGGGGAGTGGTTGCCCGGCCTGTCTTCCCCATCTTACCTCGATGGAAGTCTTCCTGGTGACAATGGTTTTGATCCTCTGGGGCTTGCGGAGGACCCCGAGAACTTGAAATGGTACGTGCAGGCTGAGCTTGTGAACAGTAGATGGGCGATGTTAGGGGTTGCCGGAATGCTGCTGCCGGAAGTTTTTACAAAGATAGGGATCATCAATGCCCCCCAGTGGTATGATGCAGGGAAAGCGGAGTACTTCGCATCATCTTCTACCCTCTTTGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCAGAAGGTGGCAGGACATCAAGAACCCAGGAAGTGTGAACCAGGACCCCATTTTCAAGAACTACAGCTTACCTCCCAATGAGGTGGGTTACCCCGGTGGTATTTTCAACCCCCTGAACTTTGCACCAACTGAGGAGGCCAAGGAAAAGGAACTTGCTAACGGGAGATTAGCAATGTTGGCATTCCTGGGGTTTATTGTTCAACACAACGTGACTGGAAAAGGGCCATTTGACAACCTCTTGCAGCACATCTCAGACCCATGGCACAACACCATCATCCAAACACTGAGGGGCTTCTAA 759 0.5191 MATVTTQASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSYRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKNYSLPPNEVGYPGGIFNPLNFAPTEEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTLRGF* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0624 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Vvi17g0624 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Vvi17g0624 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 11 248 IPR001344 GO:0009765|GO:0016020
Vvi17g0624 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
Vvi17g0624 252 SUPERFAMILY Chlorophyll a-b binding protein 52 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0624 Vvi-Chr17 6886427 6887437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0624 41 245 Chloroplast and Mitochondria Gene Families AT3G61470 54.502 3.92e-79 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0624 K08910 - vvi:100232934 518.079