Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0623 ATGGGAAGGGTAAAGCTAAAGATAAAGAGATTAGAGAGCACTAGCAATCGCCAAGTGACCTATTCAAAACGTAGGAATGGGATCTTGAAGAAAGCTAGGGAATTATCGATATTATGTGACATTGAAATCATCCTTCTTATGTTTTCTCCAACTGGACGGCCTACATTGTTCCATGGTGCCCGAAGCGATATAGAAGAGGTTATTGCAAAGTTCGCTCAATTAACACCACAGGAAAGGGCAAAAAGGAAATTGGAGAGCCTTGAAGCACTGAAGAAGACCTTTAAAAAGTTGGACCATGATGTAAATCTACAAGACTTTTTGGGTGCAAGCACTCAGACAATTGAGGAATTGACTAATCAAGCCAGGCTATTGCAAGCTCAACTGACAGAAGTGCATAAGAGACTGAGCTATTGGAGCAATCCAGATAAGGTTGATAGTACAGAACATCTTAGGCAGATGGAAGACTCGCTTAGGGAATCGCTTAACCGAATCCGTGTACACAAGGAAAATTTTGGAAAGCACCAACTTATGTCTCTAGAATGCGCTAGCCAGTTCCAGAATGGTATGCATTTACCTTTGATAATGGATGGTGTGCAAGAAGCCCAACCCCTTTCATGGCTTCCTAATAATGAGAATCAACATTTGATATTACCTGAGGAGCCAAGTTATTTACCTCAGAGGGATATGGAGTGCTCAGCTGATGCCTCCATTCCTGGCTATTCTGGTTACTATAGCACTGGCAAACAAACAGAGATTGGTAATTCAGGGCAGGTTGATGAACAGGGGCAGGAAGGTTCTGCCTTGAACCAGTTAAGTGGGAATTCAAATTTGAGACTGCAGCTCAGTGAGCAATATTTATACTCCCCATTTGGTAATCTGAATTTACCTGACGAGAAGAAATTGAAGCCTGAAATGGAGATGAACTTACAAGGAAATCCTGTGGATTATCAAGTAAATGGCAATTTTGAAATCCCTGCACCTATATATGACAACAGACAGCATACTTGGGTTTCTGCTTCTGGGCCTTGTTCCATTGCCATGTTTGATGAGAACTCATTCTCCCAGGGGAACGTTCCTCCCATTGTGCATTCTGCTTTTCCTGACTCACAACAAAACTCACTCTCATGA 1128 0.4211 MGRVKLKIKRLESTSNRQVTYSKRRNGILKKARELSILCDIEIILLMFSPTGRPTLFHGARSDIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNLQDFLGASTQTIEELTNQARLLQAQLTEVHKRLSYWSNPDKVDSTEHLRQMEDSLRESLNRIRVHKENFGKHQLMSLECASQFQNGMHLPLIMDGVQEAQPLSWLPNNENQHLILPEEPSYLPQRDMECSADASIPGYSGYYSTGKQTEIGNSGQVDEQGQEGSALNQLSGNSNLRLQLSEQYLYSPFGNLNLPDEKKLKPEMEMNLQGNPVDYQVNGNFEIPAPIYDNRQHTWVSASGPCSIAMFDENSFSQGNVPPIVHSAFPDSQQNSLS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0623 375 Coils Coil 77 97 - -
Vvi17g0623 375 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Vvi17g0623 375 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
Vvi17g0623 375 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi17g0623 375 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Vvi17g0623 375 Coils Coil 150 170 - -
Vvi17g0623 375 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Vvi17g0623 375 Coils Coil 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0623 Vvi-Chr17 6880943 6885842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0623 1 359 Type I MADS-box Gene Family AT2G03060 46.429 5.67e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi17g0623 SRF-TF 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0623 - - vvi:100250157 754.592