Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0613 ATGGAGAGCTTTCCAACTGACCCTTTGTATTCTCCTCTTGATATTATTCCAAGCCCAGCAGTAATTCAAGAGGATTTTGGCTGTGGTTATGGAAATGAGTTGGGAGGTTGGAATGAAGTGAACCCTGCGTTTGATCATGAGAAACAACCCTTCTTGTTATGTGATAAGAATGGTCGACAGACTGAGGAGGAGTCTACCAAAGAAAACAAAGAGACCAGAAAAGGCAGAGATGAAAAGAGTAACAGTTCAAAAATGTTATCTCGAAACACTATTTCTCAGTACTTCTACATGCCCATAACCCAAGCAGCCAGGGAGCTTAAAGTGGGCTTAACACTTCTGAAGAAAAGGTGTAGGGAGTTGGGTATTCGTAGATGGCCTCATAGAAAGTTAATGAGCCTCCAAACCCTAATCAAGAACGTTCAGGAATTGGGAAAAGATGAGGGCGATGGGAGTGATCAGGGAAAGTTAAGAGAAGCCATCCAGATACTAGAGCAAGAGAGGAAGTTGATGGAGGAGATGCCAGATTTGCAACTCGAAGACAAGACAAAGAGGCTTAGACAAGCCTATTTCAAGGCAAACTACAAGAAGAGAAAGCTCATGGGCACGATGGATTCTTCCCAATCTTCCTCCAACAGCAACCCTCAAACAGTGGAGGTTGCCATGAATTATACAACCATGGATGAAGAAGATGAAATGAAGTCTCTCTTGTCTGACTCTTTCTCTTCTACTAACATGATGTTGTGA 744 0.4274 MESFPTDPLYSPLDIIPSPAVIQEDFGCGYGNELGGWNEVNPAFDHEKQPFLLCDKNGRQTEEESTKENKETRKGRDEKSNSSKMLSRNTISQYFYMPITQAARELKVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELGKDEGDGSDQGKLREAIQILEQERKLMEEMPDLQLEDKTKRLRQAYFKANYKKRKLMGTMDSSQSSSNSNPQTVEVAMNYTTMDEEDEMKSLLSDSFSSTNMML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0613 247 PANTHER PROTEIN RKD4 76 226 IPR044607 GO:0003700
Vvi17g0613 247 Coils Coil 153 173 - -
Vvi17g0613 247 MobiDBLite consensus disorder prediction 56 85 - -
Vvi17g0613 247 ProSiteProfiles RWP-RK domain profile. 67 154 IPR003035 -
Vvi17g0613 247 Pfam RWP-RK domain 86 133 IPR003035 -
Vvi17g0613 247 MobiDBLite consensus disorder prediction 56 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0613 Vvi-Chr17 6799196 6800136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0613 73 201 AtRKD Transcription Factor Family AT1G18790 65.152 1.01e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi17g0613 RWP-RK 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0613 - - vvi:100253640 489.96