Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0611 ATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAACTCTGCAATCGCTGCAAGGAACTGAAGTCTCAGGATCATCTGAGGGTGGGGATGAGGGTTCTTGCAGTCACACAGTCGATCCGTCCACTTCCGCCCTTGAAGATAAGGGGCTGGAGGAACATCATGGGCCGGAGGAAGAAGAACCACTCATTCAGACGGTGGAATGCCGCATTTGTCAAGAAGAGGATAGCATCAAGAATTTGGAGGTACCTTGTGCTTGCAGTGGCAGTTTGAAGTTTGCTCATAGGAAATGTGTTCAACGATGGTGCAATGAGAAAGGAGATGTAACTTGCGAGATCTGTCATCAGCCTTATCAACCTGGCTATACTGCTCCACCTCCTCCACAGTCTGAGGATGCTACAATTGATATCAGCGAGGGTTGGACAATCTCTGGTACTCCCTTGGATTTAAATGATCCTCGACTTTTGGCAATGGCAGCAGCAGAGCGCCATTTTCTGGAGGCTGAGTATGAAGAGTATGCTGATACAAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCGGCCCTAATTTTAATGGCTCTTCTACTTCTGAGGCATGCGCTGAACATCACCAATGCCGATGGGGATGATGATGCTTCCAACTTTTTCTCGCTTTTCCTGCTTCGAGCTGCTGGTTTCCTTCTCCCTTGCTACATTATGGCCTGGGCTATCAGTATATTGCAGCGTCGAAGACAAAGACAGGAAGCTGCAGCAGCATTGGCAGCAACCGAAGTTGCATTTATGCTGCAGGCTGGGCAACATAGAGGCTTGCAGTTTACAATAGCACCGGGACCTGCAGTGACTCCACATCAGGAGCCACTTCAATAA 876 0.492 MGDHLVLCVDRLIKPQTLQSLQGTEVSGSSEGGDEGSCSHTVDPSTSALEDKGLEEHHGPEEEEPLIQTVECRICQEEDSIKNLEVPCACSGSLKFAHRKCVQRWCNEKGDVTCEICHQPYQPGYTAPPPPQSEDATIDISEGWTISGTPLDLNDPRLLAMAAAERHFLEAEYEEYADTNASGAAFCRSAALILMALLLLRHALNITNADGDDDASNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAAALAATEVAFMLQAGQHRGLQFTIAPGPAVTPHQEPLQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0611 291 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Vvi17g0611 291 MobiDBLite consensus disorder prediction 49 65 - -
Vvi17g0611 291 MobiDBLite consensus disorder prediction 20 65 - -
Vvi17g0611 291 FunFam RING/FYVE/PHD zinc finger protein 60 128 - -
Vvi17g0611 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 127 IPR013083 -
Vvi17g0611 291 Coils Coil 159 179 - -
Vvi17g0611 291 SUPERFAMILY RING/U-box 69 122 - -
Vvi17g0611 291 Pfam Protein of unknown function (DUF3675) 123 240 IPR022143 -
Vvi17g0611 291 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 250 IPR033275 -
Vvi17g0611 291 CDD RING_CH-C4HC3_MARCH 72 118 - -
Vvi17g0611 291 SMART ringv_2 71 118 IPR011016 GO:0008270
Vvi17g0611 291 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
Vvi17g0611 291 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0611 Vvi-Chr17 6786332 6792771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0611 71 118 C3H Transcription Factor Family AT2G37950 43.137 2.98e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0611 - - vvi:100250124 540.421