Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g0608 ATGGGCGGACATGCTGTGGATGGCTGCAGGGAGTTCATGGCAAGTGGAGTTGAGGGTACGAGTGCTGCTTTTACATGTGCTGCTTGTGGCTGCCACCGGAATTTCCACAGAAAGGAAGTGGACTCTGAGGTAGTTTGTGACTCTTCCTAG 150 0.5267 MGGHAVDGCREFMASGVEGTSAAFTCAACGCHRNFHRKEVDSEVVCDSS* 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g0608 49 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 43 - -
Vvi17g0608 49 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 39 IPR006456 -
Vvi17g0608 49 Pfam ZF-HD protein dimerisation region 1 40 IPR006456 -
Vvi17g0608 49 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 1 40 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g0608 Vvi-Chr17 6764792 6764941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g0608 1 46 ZF-HD Transcription Factor Family AT1G74660 82.609 5.96e-24 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi17g0608 ZF-HD_dimer 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g0608 - - vvi:104882311 108.997